BAC Information

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BAC

Clone NameMSMg01-404L20
Chromosome14 (Build37)
Map Location 94,961,451 - 95,161,812
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404L20.T7 (MSMg01no404_l20.b1)MSMg01-404L20.TJ (MSMg01no404_l20.g1)
ACCAG503336AG503337
length753753
length of high quality
(start - end)		478 (62 - 539)469 (67 - 535)
definitionCHROMAT_FILE: MSMg01no404_l20.b1 PHD_FILE: MSMg01no404_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:31 2005CHROMAT_FILE: MSMg01no404_l20.g1 PHD_FILE: MSMg01no404_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,961,451 - 94,961,928)(95,161,384 - 95,161,812)
sequence
TTGCGGCCGCTAAACGACTCCTATATTCAGAGATCCGCGGAATTCCAATA
GATTCATATATCAGAGCATTTTGGACTGAGGAATACACAGGCAGGCATGT
TGAGATTAAAATATAATTTTAAATACAAACAATAAGAAAAAATAAAATTA
TATATGCATATGAAAAGTACAAATAAAAAGAAAGAAAGCAGAGTAAGCAA
GTATAGAGAGCAAGAGAGCAGGCAGCTTTGCTTAATTACTCCACATAATT
CCAGGCTCCAGGTTCCTCCCTAGACATCCCTCTGTGACTTCCTGTCATGG
AGTGCTCCAGGTATTAGCTGAAACAAACCCTTTCCTTCTGATAGTTTTAG
TCAGTTTTGTTTTCAAATCAGCAAGAGCAAGCAATCTAAGATACATATGT
TATTGATAAGTTCTTTCCCACCATTGTCTTCTGGAGAAAAATTCCTTCTA
AGTAAATTTTACTCTTCTATAACTCATTATTTTAAATTCTGCATTATTAT
TTGAGGAATTCTGTCAGTTACATCTAACTGAGCAGTCTGTTCAGTTATGT
TTTGGAGGCACTGCTTTGTAAATATTCTTCCTGGCCTTTTTTGTTAGGGA
TTATAATTGGGGTCCTAAGATTCCCTGAATCTATTATCTGCCTTATCAAA
CGCCTTCAAAGAAATTTGGCCTTCAAATACCGCCCCCAAGGTTTCATGTT
GGTCCCCCCCCCTCCCTGTACCCCCCCTAGGGCCTTTATTCTTTCCATAA
AAA

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGACTATGAATGTATAGACTAGGACATGCCCAA
AAGGTCACCCTTCATAGCCCATTTTCCAATATTCTGACTCTTGTATTTTT
TCTTCCCTGTCTTTTTAAGTCTCAGTTGTGACATTATGAATATCCTATTT
AGGTCTAAGCACTCCACTCTCAATTGTGCTCAGCATGTTTGAAGCCATGT
GTCTGTATTCACTACTACTTATTGCAAAGAGAAGTTTCTTTGCTGTTGTT
TTATTAATTAATTTTTTATTTATTTATATTCCAAATGTTGTCTCCCCCTT
CCTGCCCTCTCTAGCAGAGTTCTTACCATTAGACTGGATATTTCCCTACC
TTCGGGCATCATGTTTCTGCAAGATTAGGTGTATCCTCTCCCAATGAGGC
TAGACAAGGTTGTCCTCTGGTACATAAGGGCCCAGGACCTTGGATGACCC
TGTGTATGTTCTTTGGTTGGTAGCTCAGTTTATGGGAGTTCCTAGATTTC
CTGATTAACTGACACTATTGTTCTTCCCCTTCAGTTCCTTCAATCCTTTT
CCCTAGTCTTCTATAGGGACCCCCCAGTGCAGGGGGGTTGGTGAAACTCC
TAAAAGTCCTGATATCCGTCTGATGTGAGAAACTCTCTCACTCCCTCCTA
TTTTTTTTTATTGCCCCTCTTCTTTATACCGACACTTTTTTTTCTTCCTC
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_l20.b1 MSMg01no404_l20.b1 CHROMAT_FILE:
MSMg01no404_l20.b1 PHD_FILE: MSMg01no404_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:31 2005
         (478 letters)



>mm_chr14_94961251_94962128
          Length = 878

 Score =  917 bits (474), Expect = 0.0
 Identities = 477/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagcattttggactgaggaatacacaggcaggcatgttgagattaaaatataatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagcattttggactgaggaatacacaggcaggcatgttgagattaaaatataatttta 260

                                                                       
Query: 61  aatacaaacaataagaaaaaataaaattatatatgcatatgaaaagtacaaataaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacaaacaataagaaaaaataaaattatatatgcatatgaaaagtacaaataaaaaga 320

                                                                       
Query: 121 aagaaagcagagtaagcaagtatagagagcaagagagcaggcagctttgcttaattactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaagcagagtaagcaagtatagagagcaagagagcaggcagctttgcttaattactc 380

                                                                       
Query: 181 cacataattccaggctccaggttcctccctagacatccctctgtgacttcctgtcatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacataattccaggctccaggttcctccctagacatccctctgtgacttcctgtcatgga 440

                                                                       
Query: 241 gtgctccaggtattagctgaaacaaaccctttccttctgatagttttagtcagttttgtt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctccaggtataagctgaaacaaaccctttccttctgatagttttagtcagttttgtt 500

                                                                       
Query: 301 ttcaaatcagcaagagcaagcaatctaagatacatatgttattgataagttctttcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaatcagcaagagcaagcaatctaagatacatatgttattgataagttctttcccac 560

                                                                       
Query: 361 cattgtcttctggagaaaaattccttctaagtaaattttactcttctataactcattatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgtcttctggagaaaaattccttctaagtaaattttactcttctataactcattatt 620

                                                                     
Query: 421 ttaaattctgcattattatttgaggaattctgtcagttacatctaactgagcagtctg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaattctgcattattatttgaggaattctgtcagttacatctaactgagcagtctg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_l20.g1 MSMg01no404_l20.g1 CHROMAT_FILE:
MSMg01no404_l20.g1 PHD_FILE: MSMg01no404_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:31 2005
         (469 letters)



>mm_chr14_95161384_95162252
          Length = 869

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgactatgaatgtatagactaggacatgcccaaaaggtcacccttcatagcccattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgactatgaatgtatagactaggacatgcccaaaaggtcacccttcatagcccattttc 370

                                                                       
Query: 61  caatattctgactcttgtattttttcttccctgtctttttaagtctcagttgtgacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caatattctgactcttgtattttttcttccctgtctttttaagtctcagttgtgacatta 310

                                                                       
Query: 121 tgaatatcctatttaggtctaagcactccactctcaattgtgctcagcatgtttgaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgaatatcctatttaggtctaagcactccactctcaattgtgctcagcatgtttgaagcc 250

                                                                       
Query: 181 atgtgtctgtattcactactacttattgcaaagagaagtttctttgctgttgttttatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atgtgtctgtattcactactacttattgcaaagagaagtttctttgctgttgttttatta 190

                                                                       
Query: 241 attaattttttatttatttatattccaaatgttgtctcccccttcctgccctctctagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 attaattttttatttatttatattccaaatgttgtctcccccttcctgccctctctagca 130

                                                                       
Query: 301 gagttcttaccattagactggatatttccctaccttcgggcatcatgtttctgcaagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gagttcttaccattagactggatatttccctaccttcgggcatcatgtttctgcaagatt 70

                                                                       
Query: 361 aggtgtatcctctcccaatgaggctagacaaggttgtcctctggtacataagggcccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aggtgtatcctctcccaatgaggctagacaaggttgtcctctggtacataagggcccagg 10

                    
Query: 421 accttggat 429
           |||||||||
Sbjct: 9   accttggat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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