BAC Information

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BAC

Clone NameMSMg01-404M12
Chromosome14 (Build37)
Map Location 38,533,554 - 38,533,797
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404M12.T7 (MSMg01no404_m12.b1)MSMg01-404M12.TJ (MSMg01no404_m12.g1)
ACCAG503368AG503369
length765755
length of high quality
(start - end)
244 (62 - 305)238 (64 - 301)
definitionCHROMAT_FILE: MSMg01no404_m12.b1 PHD_FILE: MSMg01no404_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:34 2005CHROMAT_FILE: MSMg01no404_m12.g1 PHD_FILE: MSMg01no404_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCAAAACGACTCACATTTCAAACACGATCCGCGGAATTCCAGAAT
TGCCCTGTGTTTTTAAAGCTGGGAAAGAAGCCTTTTTTGTGTATCATCCA
TCCATTTGGAAACTGACAAATGAGATAACTGGTGTTACTTTTGTACCTTT
ACATGGCAGCCTTCTAAGAGAGCTTTGACTGTCATCACAAATAGAGAATG
ACACATTTCACATTTCAGCACCATGGGCAAGGAATTTCACTATAACCTCA
CTAACTAGTTATTATACTTGTTGCATTTGTTGCATAGAGCATTTATTAAA
TGTTGCTTTTTGTTGCATAGATTTCATAATAACCTCACTAACTAGTTATT
ATACTTGTTGCATTTGTTGCATAGAGCATTTATTAAATGTTGCATTTGTT
GCAAAGAGCTCTATTAAAATAGAGTATTTCAGTCATTTTCAGAATTTCTT
TAATTATAAATGAGGTAGAGTTAGATTTAAGGATATAATCATTTAACTAC
ACAATTCAGGCACTTACTTTTATTTAGCATTATCCACGTACCTTTTTGAG
AAAAGGAGAAGTATACTAGGGTTTTTTAAAGGGAAAAATCTTTTTTTATT
AATTCCTTTAAGGAATTAATGGCACCATATTTGTGCTCATAATCCCCTCT
CAATCTCCTCCTAAATTTTGCCCCAACCCCCTCCCCCTTATTCCAAATTT
TTGGGGCCCCTTCTCCCTCACTTATCATACTTATTCCATTTTAATCTCTT
TACTCTCTCCTTTCN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TTCAAAACAATTCCTATTAAATTATCTGGACCTGGGCATTTATTAGTTGG
GAGACTTTTATTGACTGCTTCTGTTTCCTTAGGGGTTAAATGTCTAGTTA
ATTGTTATCTGATCTTGATTTAAGGTTGGTAAATTGTATTTATCAAGAAA
ATTATTCATTTGTTTTATCTTGAAGATTACAGGTTTTTTTTGTATGACCT
AATGATTCTTTGGCTTTCCTTGATGTCTGTTGCTATGTTCCCACTTTTCT
TTTCTATCTTTTCATAACATACCCTTTCTTTTCTTTTCTTTTCTTTTCTC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TCTTTTCTTTTTCTCTTTTCTCTTCTTTTCTTTCTTTTCTTTTTCTTCTC
TTCTCTTCTTTCTTTATTCTTCTTTTCTTTTCTTTTTCTTTCTTTTTTTT
TTTTTGCTTCAACTGCTGCTTATTGACATTCACTTTGTCTTTATATTATT
ATGTCTGGAAACTCCGCCGAAAATAACGTGTACAATTGTTATTTCTGCCC
TGCCCATTTTGTTAATGTACCATTTACAATGGGGCAACTCTTTTTTTTTC
TCTACAATATTGCCCCGATTCACCTCCCCATATCTTCTACCCTGTTAACT
TTGTCCCTCCTCTTTTCCTTCCCCCTGTTTTTCTTTGTTTAATTACTGTT
TATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_m12.b1 MSMg01no404_m12.b1 CHROMAT_FILE:
MSMg01no404_m12.b1 PHD_FILE: MSMg01no404_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:34 2005
         (244 letters)



>mm_chr14_38533354_38533997
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaagctgggaaagaagccttttttgtgtatcatccatccatttggaaactgacaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttaaagctgggaaagaagccttttttgtgtatcatccatccatttggaaactgacaaat 385

                                                                       
Query: 61  gagataactggtgttacttttgtacctttacatggcagccttctaagagagctttgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagataactggtgttacttttgtacctttacatggcagccttctaagagagctttgactg 325

                                                                       
Query: 121 tcatcacaaatagagaatgacacatttcacatttcagcaccatgggcaaggaatttcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 tcatcacaaatagagaatgacacatttcacatttcagcaccatgggcaaggaatttcaca 265

                                                                       
Query: 181 ataacctcactaactagttattatacttgttgcatttgttgcatagagcatttattaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataacctcactaactagttattatacttgttgcatttgttgcatagagcatttattaaat 205

               
Query: 241 gttg 244
           ||||
Sbjct: 204 gttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)