BAC Information

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BAC

Clone NameMSMg01-405P10
Chromosome14 (Build37)
Map Location 28,918,032 - 29,102,011
singlet/doubletdoublet
Overlap geneErc2
Upstream geneIl17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P10.T7 (MSMg01no405_p10.b1)MSMg01-405P10.TJ (MSMg01no405_p10.g1)
ACCAG504270AG504271
length754742
length of high quality
(start - end)
236 (331 - 566)358 (173 - 530)
definitionCHROMAT_FILE: MSMg01no405_p10.b1 PHD_FILE: MSMg01no405_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:06 2005CHROMAT_FILE: MSMg01no405_p10.g1 PHD_FILE: MSMg01no405_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,101,776 - 29,102,011)(28,918,032 - 28,918,389)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCAGCACTTCCCCCCAGAGGTTAGGAATCTCTTTGCTGGGTCTT
TTCAAGTTGCGAGTACAGCTCCAAGCTCAGGAAGTTCCCGAGTGCAGCAC
TATAGTAATGTATAGGGTAAAGTCATGCAAGAAATATTTGTCTCATTCCC
ACACAGTCAACATGGTAATTATATAGGAGCTTGGACATTAAGGACCCAGA
CATAATGGTCTGGGTTAAAAGTGTAATTACAGCTCAGAAGTAGCATATGC
CTGGGGACATTATACTACAATTCTTTTTCAAAGAGAGAACACACAAAATC
AAGTGGCACACTGGGGTCTCCCCTTTACTATTTTTGGAAAAAATCCCATT
AGAGAATAATGTACCATAATGACGATTCAAGAGCAGACAGGAGTTGGAAA
CTGTTAATAAACTAGGTCTTTAGTTCTCCAGCATTTCAAAGTTAATGGAC
TAAGGTTCTCTCTGACTCTCACACTTTATGGAACACTTTATTTGACATTT
GCATTACAGAGAAAAATCCTTCAGATACCCACATCTTATAATTGCATAAG
GAAAGGAAGCTATTATTTCATTCTTGGTGTGACTGCCCGGAGGTGCCTTA
ACAAAATATTCATGTTATACCCTACTGACTTCTTATAAAGTTTATACGCG
AAGAGCGAATGCCCTGGGTGGTGGCCAATAACTCTACTGCCTCTCATGTA
TTGA
CCCGATGAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTAAACATCAACCTTCCCTCATA
GACTCTGTAGGGTTACACATGGGAAGGTCACCTTCAGGAAACGAATGGGG
AACTCAAAGAGAATTGGAAGGTGCCTTTTCAAAGCTGCATAAGAGTCTGC
CCTGCCCATCTCTTTTCCCCCTTCCCAAAGTCAATGCCATCCCAAGAATG
CTAAAGTCCATAAAAGTTCAAAGGCTTAAAGGATCATAACTATTTGGATG
CTATTTAATTGCCTTATTTTTATTATAGACTCCGCAAAGTTTAAGATTCA
CATTGGTGGGCAATTATGGTTTACGTAGATTCGGCCCAAGCCTCTAATCC
TATCAGCCAAAGCAAATGAGAACCGTTTAGTTAATAATTTGTTGCCCAGT
CACACAAACACATTCGTTCGTGGTCGGTTTTCACTTCAGCATGTGAGCAA
CATGTGGTGGTAACAGTTTGGAGACATACTGTGAGGCTGCTGAATTCCCT
GCAGGGCTTATATGTGAGGGTTCCACCCCTGCTGTCTGGCAGGCTGCTTG
TCTTGAAGTCTGGTCTCTTCTCCTCAGTCTCTGTTCTGTCTCATCTCATT
ATGACCTGATGCTGACTGCCCTTTCNCTGTTCCTGCTCTTCAGCGTGTAA
TCACTATTCACCCCCTTTTGTTATTATTGAACTATTATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p10.b1 MSMg01no405_p10.b1 CHROMAT_FILE:
MSMg01no405_p10.b1 PHD_FILE: MSMg01no405_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:06 2005
         (236 letters)



>mm_chr14_29101576_29102211
          Length = 636

 Score =  410 bits (212), Expect = e-119
 Identities = 230/236 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagagaacacacaaaatcaagtggcacactggggtctcccctttactatttttggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 aagagagaacacacaaaatcaagtggcacactggggtctccccttcactatttttggaaa 377

                                                                       
Query: 61  aaatcccattagagaataatgtaccataatgacgattcaagagcagacaggagttggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaatcccattagagaataatgtaccataatgacgattcaagagcagacaggagttggaaa 317

                                                                       
Query: 121 ctgttaataaactaggtctttagttctccagcatttcaaagttaatggactaaggttctc 180
           |||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||
Sbjct: 316 ctgttaataaactaggtctttagttctccagcattttaaggtttatggaccaaggttctc 257

                                                                   
Query: 181 tctgactctcacactttatggaacactttatttgacatttgcattacagagaaaaa 236
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctgaatctcacactttatggaacactttatttgacatttgcattacagagaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no405_p10.g1 MSMg01no405_p10.g1 CHROMAT_FILE:
MSMg01no405_p10.g1 PHD_FILE: MSMg01no405_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:06 2005
         (358 letters)



>mm_chr14_28917832_28918589
          Length = 758

 Score =  646 bits (334), Expect = 0.0
 Identities = 352/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttttcaaagctgcataagagtctgccctgcccatctcttttcccccttcccaaagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gccttttcaaagctgcataagagtctgccctgcccatctcttttcccccttcccgaagtc 260

                                                                       
Query: 61  aatgccatcccaagaatgctaaagtccataaaagttcaaaggcttaaaggatcataacta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aatgccatcccaagaatgctaaagtccataagagttcaaaggcttaaaggatcataacta 320

                                                                       
Query: 121 tttggatgctatttaattgccttatttttattatagactccgcaaagtttaagattcaca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tttggatgctatttaattgccttatttttattatagactctgcaaagtttaagattcaca 380

                                                                       
Query: 181 ttggtgggcaattatggtttacgtagattcggcccaagcctctaatcctatcagccaaag 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtgggcaattatggtttacatagattcggcccaagcctctaatcctatcagccaaag 440

                                                                       
Query: 241 caaatgagaaccgtttagttaataatttgttgcccagtcacacaaacacattcgttcgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatgagaaccgtttagttaataatttgttgcccagtcacacaaacacattcgttcgtg 500

                                                                     
Query: 301 gtcggttttcacttcagcatgtgagcaacatgtggtggtaacagtttggagacatact 358
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtcggttttcacttcagcacgtgagcaacatgtggtgggaacagtttggagacatact 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)