BAC Information

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BAC

Clone NameMSMg01-406L18
Chromosome14 (Build37)
Map Location 69,119,352 - 69,119,592
singlet/doubletsinglet
Overlap geneAdam7
Upstream geneLOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406L18.T7 (MSMg01no406_l18.b1)MSMg01-406L18.TJ (MSMg01no406_l18.g1)
ACCAG504859AG504860
length807740
length of high quality
(start - end)
242 (67 - 308)241 (81 - 321)
definitionCHROMAT_FILE: MSMg01no406_l18.b1 PHD_FILE: MSMg01no406_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:09 2005CHROMAT_FILE: MSMg01no406_l18.g1 PHD_FILE: MSMg01no406_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAATCCGCGGA
ATTCATGCTTTTTCTATAAACTTGGNCAAAAGGTAATGGCTGAGAAATTA
TCAGTCTAGGGGGAAACCTACTATTGTTTTATTAAATGGGCGTATTGTCA
GATGAGCGCCTTGGTATTTATGTTTACATTTCTAAATCTTTGCTACTCTC
AACTGTGATCAGCAAAGCTCCTTTGTGTAGTGGGCAATGGTTAATGTGGA
GACTTGTAACTGCTCAAAATTCTTAAAATGAGTGATGGTTTCATGCTCAG
CCCTAAATGGGATATTTATTTTGTTCAGTGCTCACAGAGCATAGAAGAAG
AGGGGATGTATAGCCAGGCAGGCGATAGGAAAGAGAGATATGACCCACTC
TTTCTGGAAATGGCATGGCCCTTTGTGTTTTTGAACGCCCAGCAATTTAT
GGTCCCGCTTAACAATGTCTTGTGTTAAAACCATACTCGTTTTATTTTCC
CCTGCCCGTTTTATTTTTTTCCCACGTCTCCTTTTTTATACTTGGACACC
TTTTCTGCTCTTTATCTTCACCCTTGTCGTTTATCCTCACCCACTTTGTT
TTTCTTTTTTTTCTTTTAATCTTTCCATGTTTGGTCCCCCCCATATTTGT
TTCCTTTTCTCCCCCGCCCCCCACCTCTTTATCTTTTTTCTTTGGTTCCC
CTCCACCCATTACTCTAATTTCTCATTCCCCTATCCCCCTCCTACGTAAA
TACCTATGTTTCTCACCTTTTTCCAAAATATACACTTTTTTTATTCCTTA
TCTTCTN
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTAAACACATTCTCTCC
TGCTTAGTCCCACCAGGCCAAGCACATGTTCATGCTGGAGTGAGTTAGCT
TTATTCAACCCAATATCTTGGTGATGTTCCTGGGTCTCTTCAAGGAACTA
ATAGCAGTTAAGTGACAAGAGAATGAGTTCTACAAAATTGGACACAACCA
ACCAGGGGACTAGGCATACCAGTGTGATGTAGTGAGGACTTGAAAAGCTG
GAAGGAACTCTTTCCAGGGACTCTGTTAGTGGTCTGTGATGAAAAGATGT
TATTAATATCCAATTAGTACTCATGAAAGGATCACTATTTCTAAGACCAC
AAAATATGGCTTTTAACCCTGGACAAAGACCTAGTAAATAGACAAACAAT
AAAAGATGTCGAAATGGTAATCTTCCCTAGATTGCTGTCTTACAAATGAG
TATATCTAAGATCTATTCTATAAAGAACGTGCATGGAAGAAGATCACATC
TTCTTAGTATGCTGTTGCATGAGAAGCACAAAGTGGGTCTGCTAGTTTCC
CAATCTCCAAAGTTCTGTAGGCTTTCTGAAAGGCAAGGTCCCTTACATTG
TTTTGGATCGCAAAGTTCTTTGGGTGTTCTTAACTTGACTATGAATACTC
TCCATGTGCTTTGACGAATGTGCCCTGTTTTTATTTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_l18.g1 MSMg01no406_l18.g1 CHROMAT_FILE:
MSMg01no406_l18.g1 PHD_FILE: MSMg01no406_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:09 2005
         (241 letters)



>mm_chr14_69119152_69119792
          Length = 641

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%), Gaps = 2/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctaaacacattctctcctgcttagtcccaccaggccaagcacatgttcatgctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctaaacacattctctcctgcttagtcccaccaggccaagcacatgttcatgctggag 260

                                                                       
Query: 61  tgagttagctttattcaacccaatatcttggtgatgttcctgggtctcttcaaggaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagttagctttattcaacccaatatcttggtgatgttcctgggtctcttcaaggaacta 320

                                                                       
Query: 121 atagcagttaagtgacaagagaatgagttctaca-aaattggacacaaccaaccagggga 179
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 321 atagcagttaagtgacaagagaatgagttctacacaaat-ggacacaaccaaccagggga 379

                                                                       
Query: 180 ctaggcataccagtgtgatgtagtgaggacttgaaaagctggaaggaactctttccaggg 239
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctaggcataccagtgtgatatagtgaggacttgaaaagctggaaggaactctttccaggg 439

             
Query: 240 ac 241
           ||
Sbjct: 440 ac 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)