BAC Information

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BAC

Clone NameMSMg01-407A05
Chromosome14 (Build37)
Map Location 27,391,541 - 27,392,095
singlet/doubletsinglet
Overlap genenone
Upstream geneZmiz1, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279
Downstream geneA630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407A05.T7 (MSMg01no407_a05.b1)MSMg01-407A05.TJ (MSMg01no407_a05.g1)
ACCAG505072AG505073
length760759
length of high quality
(start - end)
228 (73 - 300)564 (74 - 637)
definitionCHROMAT_FILE: MSMg01no407_a05.b1 PHD_FILE: MSMg01no407_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:32 2005CHROMAT_FILE: MSMg01no407_a05.g1 PHD_FILE: MSMg01no407_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CATGCAGTTGACCACTTCTCAACAGTCTGTTTTACGGGAACACTTTATTA
ACATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCTGGT
GATGGTAGTTTCCGTCCCTGTTTTTCTCATCCCAGGATTTCTCGTCCCGG
GTTTCAGCACCAACTCTTGCACGCTTTCTCACAACCGGCCAGGAATAACA
CAACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGG
AGCAAGAGTGTTTTTTTTTAAGCCCCCAAAAACGAAAGCGAATCCCCGTC
CCTATTTAGGAGAGTTATCCTTCGCCTAGGACGTATCACTCCCTGACTGG
TTGCAGCCCATGTCCGACTTGTTTCCACGTTTAACGTAGAGTACATGGTG
TGGAGAAATACCCTTGCCCCATGTGCAGACTATCTGTTTACCTCTTATAA
CCACCGCGCCTCTGTTTTCTTGTTTCGTTCAATGAGATGCTGTCCTCCCT
ACAGCCTATTCCTGTTTACTCTTCTTTCTTATTCTGCCCTTTGTCCCAAG
TTTAAGCATTTTCCATTTGTTGCACCCTTTTTGGTTCTTTCTGTGTTCAT
TTCTTTCTATTGTTTAGACATTACATTTATACCTTTTCCTATTCCCCCCC
TCCAACAATTTTACTTGCTCAACCTCTTCACATCCTATTTACTTACCCCC
ACCAACACCG
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCCTCTGCAAATGAGGCATCTCCAA
CACTCCCCGACCCTGTCCAATCACCTGACAGCCCCTACCTGCCTCCAAGA
AGGTTTATAAAGCCTTTGTCTCCCCTCATCTCCCAATTAAATGAGCTGCT
CACTGATGCCTGTCTCCTGAGAAGTCTGTCTTCTGGAGCTCACTCACTCG
CAGCCTGAGGTTTCCACCACTCCCCACCCCCCACCCAGTTTCCTCTCTCT
GCATCTGTTGGTTGTCCTCACGGTTGATCACAAAGTTGAGGGAGGGAGAT
CTTAATGTGAATGACAAAAATTAGGCAAAATTGTAGAATTTCTGAAATCC
TACGGGACCCAAAAGTTACTTTTATGTGTGTGACGGTTTGAATGAGAGCT
GTTGCCCACAGCCTCTGGGGTTTGAACACTTGGCTCCAGTTGGTGTTGTA
CAGCTTGGGCCACTTTAGGTTGTGCAACCTCCTGGAGAAAGTGTGTCACT
AGAGGAAAGAAAGCAGCCTGAGGCCATTTTCCAGCTCACCTTCACCTTTC
TGCTCCTGCTTACATGTCCCCTGCCTGCTGCTCCCACTGTAAGAGAGTCT
AACCCTCTGCAACTGTGAGCCCCAAACAAAATGCTTGCTTTTGAAAGTTG
CCTTGGTCATGGTGTTTTAATCACAGCAATACGAAATAACTAAGAAACAG
GACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_a05.g1 MSMg01no407_a05.g1 CHROMAT_FILE:
MSMg01no407_a05.g1 PHD_FILE: MSMg01no407_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:32 2005
         (564 letters)



>mm_chr14_27391541_27392504
          Length = 964

 Score = 1019 bits (527), Expect = 0.0
 Identities = 548/555 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccctctgcaaatgaggcatctccaacactccccgaccctgtccaatcacctgacagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctccctctgcaaatgaggcatctccaacactccccgaccctgtccaatcacctgacagcc 496

                                                                       
Query: 61  cctacctgcctccaagaaggtttataaagcctttgtctcccctcatctcccaattaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cctacctgcctccaagaaggtttataaagcctttgtctcccctcatctcccaattaaatg 436

                                                                       
Query: 121 agctgctcactgatgcctgtctcctgagaagtctgtcttctggagctcactcactcgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agctgctcactgatgcctgtctcctgagaagtctgtcttctggagctcactcactcgcag 376

                                                                       
Query: 181 cctgaggtttccaccactccccaccccccacccagtttcctctctctgcatctgttggtt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 375 cctgaggtttccaccactccccaccccccacccagtttcctctatctgcatctgttggtt 316

                                                                       
Query: 241 gtcctcacggttgatcacaaagttgagggagggagatcttaatgtgaatgacaaaaatta 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 gtcctcacggttgatcacaaagttgagggagggagatcttagtgtgaatgacaaaaatta 256

                                                                       
Query: 301 ggcaaaattgtagaatttctgaaatcctacgggacccaaaagttacttttatgtgtgtga 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 ggcaaaattgtagaatttctgaaatcctatgggacccaaaagttacttttatgtgtgtga 196

                                                                       
Query: 361 cggtttgaatgagagctgttgcccacagcctctggggtttgaacacttggctccagttgg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cggtttgagtgagagctgttgcccacagcctctggggtttgaacacttggctccagttgg 136

                                                                       
Query: 421 tgttgtacagcttgggccactttaggttgtgcaacctcctggagaaagtgtgtcactaga 480
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135 tgtggtacagcttgggccactttaggttgtgtaacctcctggagaaagtgtgtcactaga 76

                                                                       
Query: 481 ggaaagaaagcagcctgaggccattttccagctcaccttcacctttctgctcctgcttac 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 75  ggaaagaaagcagcctgaggccattttccagctcactttcacctttctgctcctgcttac 16

                          
Query: 541 atgtcccctgcctgc 555
           |||||||||||||||
Sbjct: 15  atgtcccctgcctgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)