BAC Information

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BAC

Clone NameMSMg01-407C16
Chromosome14 (Build37)
Map Location 83,720,803 - 83,721,253
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407C16.T7 (MSMg01no407_c16.b1)MSMg01-407C16.TJ (MSMg01no407_c16.g1)
ACCAG505190AG505191
length732738
length of high quality
(start - end)
513 (46 - 558)549 (78 - 626)
definitionCHROMAT_FILE: MSMg01no407_c16.b1 PHD_FILE: MSMg01no407_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:44 2005CHROMAT_FILE: MSMg01no407_c16.g1 PHD_FILE: MSMg01no407_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTATGCTGTTCTTTGTTTGTGTGTTTAAAGTAATATATAAAA
TTCAAGGCATTATATTACCTGTACTTTCTGGAATATTTTGATTCAAATTT
TAAATCATCTAGATACATTTTTTATTCCAGAACCTGCAATGTTGAATAGT
TCATAAAACGTTAGCAATTTTCTTATATTAGATGGTCAATAGTCTAAAAT
TGAAAGTATTAGTGATTGAAAATTTCATTTTCAGTTCTTAACTCCAAGAC
TTAATAAATTATGTATTTTAATAAATTATTGGGAAGGATTATCCTTGAAG
TTATTGCTGAGTATCTTGTACGAACACAGATCAACTAATTAGGAAGTGTA
AAAGTATTACTCCCAGCAGGTTCTATGGGTTTATGCCAAGACGTGTTTTC
CATCCTAGAGAGGCGATCTAAAGAAACATCCATCANACAATTCCCTAAAG
TGCTAGGATTAGCCAAATCCTATTCTATTGATGTGGTGTATGGATTTGTT
GCAGTGCCAGCTGTATTCCAAGATCATGGGACAAGCTTAATGTTAGTGAC
AGTTATGGACCATGCCAGTTGTTTGTACGCTAAGACATTGGAATTGCCTA
GCTTTGCTTATTAAAAGGCAAACTATTCACTTTATGAAAGTTTCTTAAAC
TTTGGCCAAAATCAAGTTATCAATTATTTTGT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
TGATTAGCACCTGAAAAAATGTTCAGCATTCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTTACACCAGTCAGAATGGCTAAG
ATCAAAATTTCAGGTGGCAGCAGATGCTGGTAAGGATGTGGAGAAAGAGA
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCACTCAGTTCCTCAGAAAATTGAACATGGTACTACAGGTGGATCCCA
TAATACCTCTCTTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGAAG
GACACATCATGCACTATGTTCATAGCAACCTTGTGTATAATAGCCAGAAG
CTGGAAAGAACCCGGATGTCCCTTAACAGAAGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATAAAAAGAATGAATTTA
TGAAATTCTTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATACTATCCCAAAACTTAGTATACCCAAGATATAAGATACCATTTGCCAA
ATGCATGAAACTCTTGATAAATGGAGACCAAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_c16.b1 MSMg01no407_c16.b1 CHROMAT_FILE:
MSMg01no407_c16.b1 PHD_FILE: MSMg01no407_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:44 2005
         (513 letters)



>mm_chr14_83720799_83721711
          Length = 913

 Score =  828 bits (428), Expect = 0.0
 Identities = 445/451 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgttatgctgttctttgtttgtgtgtttaaagtaatatataaaattcaaggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattcttgttatgctgttctttgtttgtgtgtttaaagtaatatataaaattcaaggca 396

                                                                       
Query: 65  ttatattacctgtactttctggaatattttgattcaaattttaaatcatctagatacatt 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttatattacctgtgctttctggaatattttgattcaaattttaaatcatctagatacatt 336

                                                                       
Query: 125 ttttattccagaacctgcaatgttgaatagttcataaaacgttagcaattttcttatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttttattccagaacctgcaatgttgaatagttcataaaacgttagcaattttcttatatt 276

                                                                       
Query: 185 agatggtcaatagtctaaaattgaaagtattagtgattgaaaatttcattttcagttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agatggtcaatagtctaaaattgaaagtattagtgattgaaaatttcattttcagttctt 216

                                                                       
Query: 245 aactccaagacttaataaattatgtattttaataaattattgggaaggattatccttgaa 304
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 215 aactccaagacttaataaattatgtattttaataaattattgggtaggatcatccttgaa 156

                                                                       
Query: 305 gttattgctgagtatcttgtacgaacacagatcaactaattaggaagtgtaaaagtatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gttattgctgagtatcttgtacgaacacagatcaactaattaggaagtgtaaaagtatta 96

                                                                       
Query: 365 ctcccagcaggttctatgggtttatgccaagacgtgttttccatcctagagaggcgatct 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 95  ctcccagcaggttctatgggtttatgccaaggcgtgttttccatcctagagaggctatct 36

                                          
Query: 425 aaagaaacatccatcanacaattccctaaag 455
           |||||||||||||||| ||||||||||||||
Sbjct: 35  aaagaaacatccatcaaacaattccctaaag 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)