Query= MSMg01no407_k18.b1 MSMg01no407_k18.b1 CHROMAT_FILE:
MSMg01no407_k18.b1 PHD_FILE: MSMg01no407_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:22 2005
(598 letters)
>mm_chr14_79428706_79429699
Length = 994
Score = 1077 bits (557), Expect = 0.0
Identities = 584/595 (98%), Gaps = 6/595 (1%)
Strand = Plus / Plus
Query: 5 gaattctctttcttggggcaaccagatcttggggtacaggatttagcacttgtatacaca 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattctctttcttggggcaaccagatcttggagtacaggatttagcacttgtatacaca 264
Query: 65 gcaccagaccaacccccaacatgcttgagttttgagagcagctgtgttttgctagacatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaccagaccaacccccaacatgcttgagttttgagagcagctgtgttttgctagacatt 324
Query: 125 tgatgggaacatatttttctaataccatctaaaa-tgctcggctacacttgcataagcat 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tgatgggaacatatttttctaataccatctaaaaatgctcggctacacttgcataagcat 384
Query: 184 tatttttaaagtcttgcctgttttgttttagaagttcaagtttaatcagctccataatca 243
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 tatttt-aaagtcttgcctgttttgttttagaagttcaagtttaatcagctctataatca 443
Query: 244 gctacacagtgtcatttgggcttggtattaggcaagacttcacagcaaatcatcagcatt 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 gctacacagtgtcatttgggcttggtattaggcaagacttcacggcaaatcatcagcatt 503
Query: 304 tggcctgtgcttaatgaggtacagttaattattcacagtcgcttctacctgaacaatcaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggcctgtgcttaatgaggtacagttaattattcacagtcgcttctacctgaacaatcaa 563
Query: 364 taaaatcacttctgacttttttcattttaagccaaatttttgttatgttttacataacaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaaatcacttctgacttttttcattttaagccaaatttttgttatgttttacataacaa 623
Query: 424 aataatagctgcctgctatagtttgtagtcttagctttttagtgtgtttcatgattttta 483
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aataatagctgc----tatagtttgtagtcttagctttttagtgtgtttcatgattttta 679
Query: 484 ttttccccttgtcaagattcgcacgcccacctgctccctcagcccttggcgatgttgttt 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttttcccttgtcaagattcgcacgcccacctgctccctcagcccttggcgatgttgttt 739
Query: 544 ttggtaaatggccctgctttgtcatcttagcctgtgaatgtcctcaggtgctttg 598
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 740 ttggtaaatggccctgctttgtcatcttagcctgtgaacgtcctcaggtgctttg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 994
Length adjustment: 10
Effective length of query: 588
Effective length of database: 984
Effective search space: 578592
Effective search space used: 578592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_k18.g1 MSMg01no407_k18.g1 CHROMAT_FILE:
MSMg01no407_k18.g1 PHD_FILE: MSMg01no407_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:23 2005
(496 letters)
>mm_chr14_79580923_79581822
Length = 900
Score = 853 bits (441), Expect = 0.0
Identities = 485/507 (95%), Gaps = 14/507 (2%)
Strand = Plus / Minus
Query: 1 cttgtttcctacaaactgaaggcatgtgatagacacagactgttacagttcaggagagca 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 568 cttgtttcctacaaactgaaggcatgtgatagacacagattgttacagttcaggagagca 509
Query: 61 ggagaccgtatgattgctctgtt--tctctcctgaagactcctctgggatccacgagcag 118
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 508 ggagaccgtatgattgctctgtttctctctcctgaagactcctctgggatccacaagcag 449
Query: 119 cagggcatctcccatccccacatccttagagcacccactctgcatctggggagtggatgg 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 448 cagggcatctcccatccccacatcctcagagcacccactctgcatctggggagtggatgg 389
Query: 179 acctggaggtggccgcataggtagcttttggctgctggctttctggctactggctggtgc 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 acctggaggtggccgcataggtagcttttggcttctggctttctggctactggctggtgc 329
Query: 239 agggctggtgggcagtgtttgttcttggtttcttct--gaggtggctggactagggtagg 296
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 agggctggtgggcagtgcttgttcttggtttcttctctgaggtggctggactagggtagg 269
Query: 297 aaggctggcttcccctccactgaggaccatagcaccgtgaactaccctcttctgttctga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaggctggcttcccctccactgaggaccatagcaccgtgaactaccctcttctgttctga 209
Query: 357 tataaact----------ggttttactatttattcccttgcttcgcctggttgaacctta 406
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tataaactagcatcttccggttttactatttattcccttgcttcgcctggttgaacctta 149
Query: 407 ggtcacagtctgaactctggtgttaactcctctagatttggttaaagctcaccctgcctt 466
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 148 ggtcacagtctgaactctggtgttaactcctctaaatttggttaaagctcaccctgcctt 89
Query: 467 tgctgggtttgttgctgttttgggaaa 493
|||||| |||| |||||||||||||||
Sbjct: 88 tgctggttttgatgctgttttgggaaa 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 900
Length adjustment: 10
Effective length of query: 486
Effective length of database: 890
Effective search space: 432540
Effective search space used: 432540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
