NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACATTCTTTTGCTGCCTTCAGAGGCCCCTGACACCAACGTTT
TACACACATACACACACACACACACACACACACACACACACACACACACA
CACACACAAGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGACAGAAAGACA
GAGGGAGAAATTTTAAAAAATATGTTCATGACAAAATATCTTATATATCT
TGGAACAACAATTTCTATTGTTTCGATTGTGGAAGAATTTAAAAAATACC
CAGGATGTCATGTTGGATCATGTTGGTTCCAGCACCTGTGTAAGAAAACA
TAGTTCATTTTTATAATAAAGTTAATTAGTAGGTTGTATAACAATAAATT
CTTTGTGACTGAAAAAAAATACTGTACAACTTGATTTCAACAAAAATCTC
TAATTTTCCCTTTGATGACTCATGAATTTATATTTTATATTATAAATATG
TTTTATCTCATAAAATAGAAATATACATTACATACTGATTTTAGTGTATT
GACTGAAGAAAAAGCCATAGAATATTCTATATTGTTTACTTCTGTTATAT
TTTTTGGGAAAATATGTATTGTTTGTATCTAAATAATAACTGACTTTGGA
TCATCCATTTTCTAGCTTAAGTTATATAATATCAGATTAGAATTTGAATT
AATTAATTTTTCCTACAGATAAATGAAATATTTGGCAGTTTATC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCTTACAAG
GCTTGTTTACTAGTTAGGCACAGCGGAGGCCCGTGCCATCTTATAATAGC
GATTGCTCGCGGCACACACGGCTCTCCTCAGAGATTACTGGCGGCACACA
CGCGATTGCTCGCAGCACATACCGGCTCTCCACATCTCCCCCTTTTTATT
TTATTAAAATTTGAGGCTGGTCTTGGTCTGTGTAATTATGCCCATCCACT
GTGGCTCCTGTCTTAGGTCGTTCCTCCAATGTCACAGCCTTTCCTGTCAT
AGGGTAACCCTATCGCCACCGGGTCCCGTGTCTTAGGTTGATCTGTGCAT
GAGGAAAGTTGCCCGTCCCTGGATACCGCAGTGCTATGTGACATTAACTA
CTAAGTGACCTAGGGCGAACTCTATAAAAGAGGCCAGCCACCAATGTCAA
TTAATTTTTGAGCATAGATAGCCAGATTTCAGGGGAGGCCCCTTGCTCGA
TGGCAGCAAGTGCTTGAGTTATTACAACCTTGTCACGTGTTTGTTGGGTT
CTGAGCTTGCAAACAACCAGAGCATGACCACCAGTCCCCCGCAGTGGCAC
GCCAAATGAACGGACCCCCACCCATTCCTTAAATAAGAAAAGGCAGATAG
AATCCACGAAGAAAGGGCCTCTGTCAATTGAAGGGTCCCTCCN

Query= MSMg01no407_p06.b1 MSMg01no407_p06.b1 CHROMAT_FILE:
MSMg01no407_p06.b1 PHD_FILE: MSMg01no407_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:46 2005
         (560 letters)



>mm_chr14_107625603_107626563
          Length = 961

 Score =  967 bits (500), Expect = 0.0
 Identities = 544/560 (97%), Gaps = 5/560 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaacattcttttgctgccttcagaggcccctgacaccaacgttt--tacacaca 61
           ||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||
Sbjct: 783 ggaattcaacattcttttgctgccttcagagacccctgacaccaacgtttcacacacaca 724

                                                                       
Query: 62  tacacacacacacacacacacacacacacacacacacacacacacacacaaggagagaga 121
           |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||
Sbjct: 723 tacacacacacacacacacacacacacacaaacacacacacacacacacaag--gagaga 666

                                                                       
Query: 122 gagagagggagagagagagagacagaaagacagagggagaaattttaaaaaatatgttca 181
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 665 gagagagggagagagagagagacagaaagacagagggagaaatttttaaaaatatgttca 606

                                                                       
Query: 182 tgacaaaatatcttatatatcttggaacaacaatttctattgtttcgattgtggaagaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgacaaaatatcttatatatcttggaacaacaatttctattgtttcgattgtggaagaat 546

                                                                       
Query: 242 ttaaaaaatacccaggatgtcatgttggatcatgttggttccagcacctgtgtaagaaaa 301
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 545 ttaaaaaatacccaggatgtcatgttggatcatgttggtttcagcacctgtctaagaaaa 486

                                                                       
Query: 302 catagttcatttttataataaagttaattagtaggttgtataacaataaattctttgtga 361
           | ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 cttagtttatttatataataaagttaattagtaggttgtataacaataaatcctttgtga 426

                                                                       
Query: 362 ctgaaaaaaaa-tactgtacaacttgatttcaacaaaaatctctaattttccctttgatg 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctgaaaaaaaaatactgtacaacttgatttcaacaaaaatctctaattttccctttgatg 366

                                                                       
Query: 421 actcatgaatttatattttatattataaatatgttttatctcataaaatagaaatataca 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actcttgaatttatattttatattataaatatgttttatctcataaaatagaaatataca 306

                                                                       
Query: 481 ttacatactgattttagtgtattgactgaagaaaaagccatagaatattctatattgttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttacatactgattttagtgtattgactgaagaaaaagccatagaatattctatattgttt 246

                               
Query: 541 acttctgttatattttttgg 560
           ||||||||||||||||||||
Sbjct: 245 acttctgttatattttttgg 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space:   523050
Effective search space used:   523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)