BAC Information

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BAC

Clone NameMSMg01-408B12
Chromosome14 (Build37)
Map Location 25,332,908 - 25,333,215
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
Downstream geneLOC669315, LOC100039411, Zmiz1, I920194n01, LOC100039007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408B12.T7 (MSMg01no408_b12.b1)MSMg01-408B12.TJ (MSMg01no408_b12.g1)
ACCAG505893AG505894
length839795
length of high quality
(start - end)
38 (68 - 105)308 (72 - 379)
definitionCHROMAT_FILE: MSMg01no408_b12.b1 PHD_FILE: MSMg01no408_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:57 2005CHROMAT_FILE: MSMg01no408_b12.g1 PHD_FILE: MSMg01no408_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAATTTGCGCCGCTAAACGACTCACAATCATACACACCGCGGAATTC
AAATGTTTACATAAACACCTTTTGCTTTCTCAGAAAGTTAGGACTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTCTGTCCTACNCCCACACACCACCTTTT
CCCACCACCCCATACCATAAACCCCCCCTCCCCCCTCCCTTACACATATA
TCTCTATTTATCCACCCACCCAACACACCCCCCAAATCCACACCCCCATT
TTTCCCTTACCCCCACACCCTCCACCCACCCCCAAAACCTTCCCAAACCC
ACCCACACCCCCCCTCTTAATAATTTCCACCCCACCCCCCAAAATCCCAT
CCTCCTATTTTTTCCCCCCCTACCCCACCCACACCCCCCACTCCCCACTC
TTTTTCTCCCTTTATCCCCCCCCCCCCTCACAAAAACTCCCAACAAAACC
CAACCAATATACACCCCACACACCATCCACACTATCAAAATACTCCACCA
CTACAACCCATCCATACCACTTAACCCCACTTTCAATACCCACAATACCA
ACCCCCTTCCATAACCCCCACTAACCCTCTACAACATCACTAACAATCAA
CACACACCAACACCTCCCACCCATTTTCCCAATCATTCATCAACAACAAA
ATCTCCCCCCACTACCCTCCCCACTACACACAATTCACCCCCACCCCCCA
TATACCTCCACTACTCTCATTCCACATCTCTCACTTCTTTCACTCATCCC
CTCCTCCTATCCCCAATCACTCACCCCCCTCTCCACCCACCACCCAAACT
CACTCAATATATTAATTATTCACACCCTTTCACCCACTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTGCCTGTGCCAACCTGAATTGAAGC
CAGCAGCCCTGCAGCCCATGTGGAGACCACCACACAAGCTAAAGAAGAAA
GCCACAGAGAAAATAGGGCCACTAGAGTCTCCTTTGACCTTTGTGGGAAT
TATTTCTCCCTAACCCCCAAGGAAGTCCAGTCTCCAACTCCAGAGCAGAC
CTAGTTACTGACCGAGCTGGTTGGTTGGTAGAAGGTAGGGTCTAAATGGG
AAGAGTAGTAACAATACTTACTGTCCCCGTGGCTCCTGTCCTCCAAGTCC
AGATGTGACCCTATATGAAGCAAGGGGAAATTCCAACATCTCAAGAGCCC
AGAGTGTTTTGTCCCACCAGTGTTACGTGTGTGTCTTCCTTTCCCCCTCC
TTTTTTTCTTCTCTTTTTACTGCTCTGCCCTCTCTTCTTCTTTTTTCACT
CCCCTCTCTCTCTCTCACTACGTTTCTTTCCCTCTCTCCCTTTTTTCTCT
TCTTCTCTATTATTTCCGACCCCCCCTCCCCTCTCCCTATTTTATCTCCT
TCTTCTCCGATTTTCGCCCCCCTTTTTTTTCAATATCCCTCTCCCCTTTT
TTTCTTTCTTTTTTCCCATTTTCCCATATCCTTCTTTTCCTTTTCCTCTT
CCGTCTCTTTCATATATCGTCCTTGCCGTTACCTCCTCCTCTCTTTCCCA
TCCTTCTTTACCCTCCTTTTCCTTCCTCTTTTTCTCCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_b12.g1 MSMg01no408_b12.g1 CHROMAT_FILE:
MSMg01no408_b12.g1 PHD_FILE: MSMg01no408_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:57 2005
         (308 letters)



>mm_chr14_25332708_25333415
          Length = 708

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgcctgtgccaacctgaattgaagccagcagccctgcagcccatgtggagaccacc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 508 tcagtgcctgtgccaacctgaattgaagccagcagccctgcagtccatgtggagaccacc 449

                                                                       
Query: 61  acacaagctaaagaagaaagccacagagaaaatagggccactagagtctcctttgacctt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 acacaagctaaagaagaaagccacagagaaaataggaccactagagtctcctttgacctt 389

                                                                       
Query: 121 tgtgggaattatttctccctaacccccaaggaagtccagtctccaactccagagcagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgggaattatttctccctaacccccaaggaagtccagtctccaactccagagcagacc 329

                                                                       
Query: 181 tagttactgaccgagctggttggttggtagaaggtagggtctaaatgggaagagtagtaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tagttactgaccaagctggttggttggtagaaggtagggtctaaatgggaagagtagtaa 269

                                                                       
Query: 241 caatacttactgtccccgtggctcctgtcctccaagtccagatgtgaccctatatgaagc 300
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caatacgtactgtccccatggctcctgtcctccaagtccagatgtgaccctatatgaagc 209

                   
Query: 301 aaggggaa 308
           ||||||||
Sbjct: 208 aaggggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)