BAC Information

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BAC

Clone NameMSMg01-408D14
Chromosome14 (Build37)
Map Location 96,551,564 - 96,551,883
singlet/doubletsinglet
Overlap geneKlhl1
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408D14.T7 (MSMg01no408_d14.b1)MSMg01-408D14.TJ (MSMg01no408_d14.g1)
ACCAG505992AG505993
length916815
length of high quality
(start - end)		---320 (71 - 390)
definitionCHROMAT_FILE: MSMg01no408_d14.b1 PHD_FILE: MSMg01no408_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:08 2005CHROMAT_FILE: MSMg01no408_d14.g1 PHD_FILE: MSMg01no408_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCTCTTCCTTTTTTCCCATTCTTTATCTTCCTCTTAATCTTTTTCAAA
CTCTTCCCTTTGCCCCGGCGTATTTTTTTCACATTATCGACCCTCTTTTG
ACACACCTTTTCTATGTCATTACCATACCTACTGTATCATACCCCCTCTC
TCTCCTCATCTGTCTATCCTTAACACCCATTCTCCACTGCCGTTTACACT
TAATATACAGCTCGCTCATAATTTATGTCGATTGTTAGACACGCCTGCAA
TCGACACCCTCTGTCGTCAAACTCCCACTCTTCCCTGTTTAGGCTCTCTC
CTGTCCTCAGTACTACCTTAACTGTTCACCATTATTATACCCGTACCCTT
CTTCTTTATATCTGCACTCGTATCCCCTTCTATATTGCCGTAAGCCGTTA
AATATATAATTATATCCCTCCCTGTAACGCCCATTACTCATTCTTTATTT
CAGCTATTTTTCGTTGTAACTTCAATCCCAAATAAGCCTCAATAATAAAC
TCTATTAATATTGCTATATCCTCACATCCCTTCTCCCCCTGTCAATAATA
TCTCCCGTACTAATTCCATTTATCTACAATCTTTACCATACAAAATATAC
TCTATTAATTAACATACTTCTATACATTCTCTATAACTAATGCTTCAATG
ATACTATTCTGCCTTCTGCTCTGTATTATAAATTTTGACACAAACTTTAT
CAAAACACCCATTCTAATACAATTATCCCCTTTATTACCCCCTCTCTCAA
TTCACTATTCCCCGCAACCTCAACTTTTCACGCTATTCTACAATTTACAT
CACTTTCCCTTTTTTTCCTAATCCTCATCTCCTTTGCCTCTATCTTTCTA
AATCTTTACAACCAACCACACTATATTTTTCTACTGTATTATTATTTTCC
AATATCTTCAACATTA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTATGTGTGTTGACCATGTTGATGTAGAGG
GCCTTGATCTATGGTGTCCTCCATCCCCTCTGGCTCTTATACTCTTTCTG
TATCTTCCCCGTGGTTCACTGAGCCCTGATGGCAAGATTAGAGTGAGAAA
TACTATTTCAGTAGAGTGTTCTTAGTTTTCTCAGTACCTCTGTGGGTATA
ATTTGACACTCTAAATACCATGTTTTTTACAGATTTTGATTTTGTCTATC
TTGTTCTTACCCTTTCATATGCTATGAAAGCCCTGGTTTGTTTGCCTCTT
TGTTTTCTAGACAGAAAGAAAGGAAAGAGAGGGGAGAGGGGTGTAGTTTT
TCCCTTTTTCCCCCCCCCCTCCTTCTCTTTTCTTCCTCTTTTTTTCCTCC
TTTTCCCTTTTTTCTTTTTTCTTTTTCTTTCTCCTTCTTCTACCCTTGTT
CTTCTCCTTTTTCTCTCCTTTCTCTCTTCCTCACTCCCTTTTATTTCATT
TCTTCTTTTTTTTTATTACTGTCTTATTATCCCCCCTCTCTCTTCTCTCT
TCTCTTTTTTCTTGCCCTTTTTATTCTTTTCTTCCCTCTCTTCTATTTTT
TAACCTTCCCTCCTCTTTTTTTTCTTCCTTCTTACCTTTTTGCCATATTT
ATTCCTTTTCTTCCTCTCTCCCCTTCTTTTCTATTCCGTTTTCCCCCGTT
TGCCTCTTACTCTTTCTCCTGTCCTTTTTACTTCTCTTTTTTCTCCTTTC
TCTTCCTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_d14.g1 MSMg01no408_d14.g1 CHROMAT_FILE:
MSMg01no408_d14.g1 PHD_FILE: MSMg01no408_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:08 2005
         (320 letters)



>mm_chr14_96551192_96551911
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgtgtgttgaccatgttgatgtagagggccttgatctatggtgtcctccatcccctc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctatgtgtattgaccatgttgatgtagagggccttgatctatggtgtcctccatcccctc 633

                                                                       
Query: 61  tggctcttatactctttctgtatcttccccgtggttcactgagccctgatggcaagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tggctcttatactctttctgtatcttccccgtggttcactgagccctgatggcaagatta 573

                                                                       
Query: 121 gagtgagaaatactatttcagtagagtgttcttagttttctcagtacctctgtgggtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagtgagaaatactatttcagtagagtgttcttagttttctcagtacctctgtgggtata 513

                                                                       
Query: 181 atttgacactctaaataccatgttttttacagattttgattttgtctatcttgttcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atttgacactctaaataccatgttttttacagattttgattttgtctatcttgttcttac 453

                                                                       
Query: 241 cctttcatatgctatgaaagccctggtttgtttgcctctttgttttctagacagaaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctttcatatgctatgaaagccctggtttgtttgcctctttgttttctagacagaaagaa 393

                               
Query: 301 aggaaagagaggggagaggg 320
           ||||||||||||||||||||
Sbjct: 392 aggaaagagaggggagaggg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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