BAC Information

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BAC

Clone NameMSMg01-408E03
Chromosome14 (Build37)
Map Location 30,091,961 - 30,305,889
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408E03.T7 (MSMg01no408_e03.b1)MSMg01-408E03.TJ (MSMg01no408_e03.g1)
ACCAG506018AG506019
length732754
length of high quality
(start - end)		450 (49 - 498)354 (78 - 431)
definitionCHROMAT_FILE: MSMg01no408_e03.b1 PHD_FILE: MSMg01no408_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:11 2005CHROMAT_FILE: MSMg01no408_e03.g1 PHD_FILE: MSMg01no408_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,091,961 - 30,092,389)(30,305,536 - 30,305,889)
sequence
NGGCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCGCCATCTAGAACAGGAGACATTGTGAGACTCTTAGTGAG
TCTTTGGGTACTCCCTTCATGTCTCCACCCAAGAGAGCTCAAACAAAGGG
GAGTACTAGACAGGCAGTGCTTTCTGTCCACCCAGGGCTCTCAAACCAGC
AGGAGATACTAGGCCACAGATATAGGCTTTGCAGGTAAGTTCTGGAACTT
GCCTGGTGGTCGGCAAGTTCTTTAACTTTGTTTCTTTAGCTCTAAAGGAG
TACACTACCCATATCATTATCAACAGCATCCTGTCAGGAGCAGCAAAGTA
ATGCTTGCTCAGGGCTCTGTGAGTGGTTGGCTAGCATCCAGGAAGGCCCC
AAGACATGTGATACATGCCAGGTAACATGCTGCTCATGTGATGGGCATAG
CAGACATGCCCTAATCTCAGAGCATTCTGCTTCTCATGGATGAGATTGAC
AAGCACAACTCACTGTCCCAGGTCTTTCTCTGTCTAAGACGAGAAGTGGG
GCAAAGACAGGTAAACCTGTAAGGAAGACTAGGGCAACCTCATTCCTGTT
TTTGGCCGGATTATCCAGAAAACGATTTTGTAACACTGGCCGGTAGAACT
ATAAAAGATTCTCATTCTCCAAACCTGTTAACACGGTCTCTCTTTCATAA
ATCAGCTTATTTGCTTGTTCCTATTACTCCGT

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGGAGGTCTGGTACGCAGGA
AGGAGCAGACTTGTGATTCATTGTAGAACCAAAAGTTGTCTCAACACGTT
ATTGGGTTTCTTGGGTCATGTTTTCAGGACCAGAGATCAGGGGACACAGA
AGCCCAAACATGAACCACATGTGATTTTAAGTACTACCAATGACAGCATG
AGTGCCAAAGTGTATCAGAGTACACCTCTATGTATTTCTTTACGTGCTTT
GCTGGGTTAACACTACAGGGTTGCATTGTCTCAGCAACCAGGAATGTGTG
GCTCACAAAACCAAAAAAGATTTCCCGGTTGCCCAGCCCTTAGGGGAGAA
CCACCCCATCCTTGGTCCACCTGGTTGGTTGTGTTGCTTTTCCTCCGCTA
TACGTTCCCCGTTTTTTCGGCGCCTTTCCTTTTTCCCTCCTTTCCTCTCC
TTTCCCCTTTTTCCTCCGATTTCCATTTATTTATCTGTCTTCTTTTACTC
CATTCACTTTTCCCCCTCCTATCCCCCTTTTTCCTCCATCTCTCCCTTCC
TTTTTTTCACGTGTTTCTGTCACCTTAATTTTCTTTTCCTTATTCTCTCT
TTCTCCCTCTTCTCTCTCTTTATCTATTACTCTTTGCCTTCCTTTATTAC
TACCCTTATTTCTCTTTTTAGCTCACCTTTGTTTCTACTCGTTCTTTATC
CTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_e03.b1 MSMg01no408_e03.b1 CHROMAT_FILE:
MSMg01no408_e03.b1 PHD_FILE: MSMg01no408_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:11 2005
         (450 letters)



>mm_chr14_30091740_30092589
          Length = 850

 Score =  791 bits (409), Expect = 0.0
 Identities = 424/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaacaggagacattgtgagactcttagtgagtctttgggtactcccttcatgtctccacc 81
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 222 gaacaggagacattgtgagactcttagtgagtctctgggtactccctacatgtctccacc 281

                                                                       
Query: 82  caagagagctcaaacaaaggggagtactagacaggcagtgctttctgtccacccagggct 141
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caagagatctcaaacaaaggggagtactagacaggcagtgctttctgtccacccagggct 341

                                                                       
Query: 142 ctcaaaccagcaggagatactaggccacagatataggctttgcaggtaagttctggaact 201
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctcaaaccagcaggaggtactaggccacagatataggctttgcaggtaagttctggaact 401

                                                                       
Query: 202 tgcctggtggtcggcaagttctttaactttgtttctttagctctaaaggagtacactacc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgcctggtggtcggcaagttctttaactttgtttctttagctctaaaggagtacactacc 461

                                                                       
Query: 262 catatcattatcaacagcatcctgtcaggagcagcaaagtaatgcttgctcagggctctg 321
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 catattattatcaacagcatcctgtcaggagcagcaaagtaatgcttgctcagggctctg 521

                                                                       
Query: 322 tgagtggttggctagcatccaggaaggccccaagacatgtgatacatgccaggtaacatg 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgagtggttggctagcatccaggaaggccccaagacatgtgatacatgccaggtaacatg 581

                                                                       
Query: 382 ctgctcatgtgatgggcatagcagacatgccctaatctcagagcattctgcttctcatgg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctgctcatgtgatgggcatagcagacatgccctaatctcagagcattctgcttctcatgg 641

                    
Query: 442 atgagattg 450
           |||||||||
Sbjct: 642 atgagattg 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_e03.g1 MSMg01no408_e03.g1 CHROMAT_FILE:
MSMg01no408_e03.g1 PHD_FILE: MSMg01no408_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:11 2005
         (354 letters)



>mm_chr14_30305336_30306089
          Length = 754

 Score =  630 bits (326), Expect = 0.0
 Identities = 347/354 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatggaggtctggtacgcaggaaggagcagacttgtgattcattgtagaaccaaaagtt 60
           ||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||
Sbjct: 554 tcatggaggtctggtacgcaggaaggagtggacttgtgattcgttgtagaaccaaaagtt 495

                                                                       
Query: 61  gtctcaacacgttattgggtttcttgggtcatgttttcaggaccagagatcaggggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtctcaacacgttattgggtttcttgggtcatgttttcaggaccagagatcaggggacac 435

                                                                       
Query: 121 agaagcccaaacatgaaccacatgtgattttaagtactaccaatgacagcatgagtgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agaagcccaaacatgaaccacatgtgattttaagtactaccaatgacagcatgagtgcca 375

                                                                       
Query: 181 aagtgtatcagagtacacctctatgtatttctttacgtgctttgctgggttaacactaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagtgtatcagagtacacctctatgtatttctttacgtgctttgctgggttaacactaca 315

                                                                       
Query: 241 gggttgcattgtctcagcaaccaggaatgtgtggctcacaaaaccaaaaaagatttcccg 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 314 gggttgcattgtctcagcaaccaggaatgtgtggctcacaaagccaaaaaagatttcccg 255

                                                                 
Query: 301 gttgcccagcccttaggggagaaccaccccatccttggtccacctggttggttg 354
           |||||||||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct: 254 gttgcccagcccttaggggagaaccaccccatccttggtctagttggttggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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