BAC Information

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BAC

Clone NameMSMg01-408F04
Chromosome14 (Build37)
Map Location 92,085,201 - 92,248,998
singlet/doubletdoublet
Overlap genenone
Upstream geneEG639558
Downstream geneEG665377, LOC638252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408F04.T7 (MSMg01no408_f04.b1)MSMg01-408F04.TJ (MSMg01no408_f04.g1)
ACCAG506068AG506069
length743759
length of high quality
(start - end)		489 (48 - 536)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no408_f04.b1 PHD_FILE: MSMg01no408_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:16 2005CHROMAT_FILE: MSMg01no408_f04.g1 PHD_FILE: MSMg01no408_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,085,201 - 92,085,684)(92,248,756 - 92,248,998)
sequence
NCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAACAATAAATCTATACAGAAATGAAAAAATCCTGGTGTAGA
GCAAAAGAATATATCAATATTATATAATAATTCTAATGAATTAGAAAAAT
AATGACAAATTTAACAGATAAGTTACATATCAATTTAATATAATACTCAA
GAGTTAAAATTCTTAACAATAAAAGCTAGCTTACATTTTAGAAGGCAAGA
ATTCTAGCAATGAACCATCCATGTTGGAGAACATTAAGTAGAAAAATTGA
AAGAAAAATAAATGGTATTTTCTCAGTAATATGTGAAATCGAGAGAAGCT
ATTTTCATGAGTTTAGAAATTATAGAGTGTAAGGGAAAGGAAAAGTAAGG
TATGTTTAGCCAAATACACAAGATATACAAAATATACAATACATAAAATA
AACAAGACACAATAAGATTGAAGGAACAGATGCTAGTGTGCTAGTGCATG
CTACTGCATCTTATGGGTGGAGGTTGAGATCAGTGCTACAATAAATGCCT
CACAATTGCCTAGACCTACATTTAGTAACAATCAACCTCCCAATGCTAAT
TCCCATATTTTTTAAATAGCCGGAATAATGTAATTCTAATGCTACTCCTT
AATTATCTTTTGCATTTATATCATTTACCGGTTATACACACCTTACCTCC
ACCCCAGAATTATGCTTTCTTGTATTTCACCTTTCTTTCCTTN

CCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGTGTATGCGATTTATGTGT
GTGGTATGTGTTCCCAACAACCACATAGAGATGTCTAAGAAGGAAATAGT
CTATCTTCCTTTGTCTTTGTCATTCTCTGAATTTTGTCTTGAAGTTGGGC
CACTAGCTAAGAACTTGCGGGTTTCTACTAGGTTTTTTAAGAGAAATTTT
ATTCCTGCAAAATGCCTGTCTTTATCATAGTCAAAGAACTTCTTGGTCTG
TGTGATCCCATTGGAATGCAGACTCACCCTTAGTACAAACCTTTAATACC
TCTGGTTGGAATCCTTTATCACACACTTTTAATCCTAACCCATGACTACT
TAAGGGATAATCATAGTGACCAATCATAGACAGATTTTACAGAATGACTC
ATAGATATGTTATGATCCTCCCTCCCTATAATTTTTGTATCAATAGACTT
CCGTGCCTTTGTATACATTTTCCTTTGTGTATTCCTGTTATTTTGTGCCC
TCTCTCTCCTCTCTCTTTTCTCCCCTTTTTTTCCTTATTCCCTCTCTTCT
TTTTATTATCCCCCTCACTTTTTTTTTCCTTTTATCCTCTTTTCCCTTTT
CTTACCTTCTCTTTCTTCTCCTCGTTTTAATTTCCTTCTTACTCTTTTCC
TCTTCCTTTTTTTTTTACCTTTTTCTCATCCTTTCTTCTTCTTTCTATCC
TCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_f04.b1 MSMg01no408_f04.b1 CHROMAT_FILE:
MSMg01no408_f04.b1 PHD_FILE: MSMg01no408_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:16 2005
         (489 letters)



>mm_chr14_92084997_92085885
          Length = 889

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaacaataaatctatacagaaatgaaaaaatcctggtgtagagcaaaagaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaacaataaatctatacagaaatgaaaaaatcctggtgtagagcaaaagaata 264

                                                                       
Query: 65  tatcaatattatataataattctaatgaattagaaaaataatgacaaatttaacagataa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tatcaatattatataataattctaatgaattagaaaaataatgacaaattaaacagataa 324

                                                                       
Query: 125 gttacatatcaatttaatataatactcaagagttaaaattcttaacaataaaagctagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttacatatcaatttaatataatactcaagagttaaaattcttaacaataaaagctagct 384

                                                                       
Query: 185 tacattttagaaggcaagaattctagcaatgaaccatccatgttggagaacattaagtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacattttagaaggcaagaattctagcaatgaaccatccatgttggagaacattaagtag 444

                                                                       
Query: 245 aaaaattgaaagaaaaataaatggtattttctcagtaatatgtgaaatcgagagaagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaattgaaagaaaaataaatggtattttctcagtaatatgtgaaatcgagagaagcta 504

                                                                       
Query: 305 ttttcatgagtttagaaattatagagtgtaagggaaaggaaaagtaaggtatgtttagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttcatgagtttagaaattatagagtgtaagggaaaggaaaagtaaggtatgtttagcc 564

                                                                       
Query: 365 aaatacacaagatatacaaaatatacaatacataaaataaacaagacacaataagattga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatacacaagatatacaaaatatacaatacataaaataaacaagacacaataagattga 624

                                                                       
Query: 425 aggaacagatgctagtgtgctagtgcatgctactgcatcttatgggtggaggttgagatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggaacagatgctagtgtgctagtgcatgctactgcatcttatgggtggaggttgagatc 684

               
Query: 485 agtg 488
           ||||
Sbjct: 685 agtg 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_f04.g1 MSMg01no408_f04.g1 CHROMAT_FILE:
MSMg01no408_f04.g1 PHD_FILE: MSMg01no408_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:16 2005
         (243 letters)



>mm_chr14_92248637_92249279
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgtgtatgcgatttatgtgtgtggtatgtgttcccaacaaccacatagagatgtcta 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctttgtgtatgcgatgtatgtgtgtggtatgtgttcccaacaaccacatagagatgtcta 303

                                                                       
Query: 61  agaaggaaatagtctatcttcctttgtctttgtcattctctgaattttgtcttgaagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agaaggaaatagtctatcttcctttgtctttgtcattctctgaattttgtcttgaagttg 243

                                                                       
Query: 121 ggccactagctaagaacttgcgggtttctactaggttttttaagagaaattttattcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggccactagctaagaacttgcgggtttctactaggttttttaagagaaattttattcctg 183

                                                                       
Query: 181 caaaatgcctgtctttatcatagtcaaagaacttcttggtctgtgtgatcccattggaat 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 182 caaaatgcctgtctttatcatagccaaagaacttcttggtctgtgtgatcccattggaat 123

              
Query: 241 gca 243
           |||
Sbjct: 122 gca 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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