BAC Information

Click to search

BAC

Clone NameMSMg01-408J10
Chromosome14 (Build37)
Map Location 75,664,984 - 75,809,144
singlet/doubletdoublet
Overlap geneCpb2, Zc3h13
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1
Downstream geneGm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408J10.T7 (MSMg01no408_j10.b1)MSMg01-408J10.TJ (MSMg01no408_j10.g1)
ACCAG506272AG506273
length764776
length of high quality
(start - end)		249 (68 - 316)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no408_j10.b1 PHD_FILE: MSMg01no408_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:37 2005CHROMAT_FILE: MSMg01no408_j10.g1 PHD_FILE: MSMg01no408_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,808,896 - 75,809,144)(75,664,984 - 75,665,321)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATCCGCGGAATT
CACAATCCTTCCACTGACCCTGCCCCACCCTTGTTGGTTTCTTCTCTGTA
CCTAAGTGGTGGTTTATTTAATTTGAGCTGACCCTGACAGAGGACTGAGC
GCTGCCTTCCCTCCCTCAAATCTGCCTGATTGTGCATCAGCTGTGCATAC
CTCAGTGGCTTCACCCTCCTAGAAAGCAGCCTTGTGTGCTCAGCCCTTTG
TAGATGCCTGCAGTGGTCCAGCTCTGCAGTAATGGGTTGGACAGGTGAGT
AAGGTAAGCAGAGACTGATTGTCTAAAGTATATCCTCCTATCAGTTTGTA
CCAATAATCTAAGTTGCCATTTTAATCCCCACTTCCCAGATTCCTCAATA
CACCCCTTCACCGGCTCTATGCTCAAAGAGTGGATGTTGGAGTCTGGCTC
GTTTCCTCTCTGGGATCCTCCCAGGATCTCTTGTTTCTATGCTGTGGATT
AATTCAGAGTCTGTTATACATTATTTGCTCACATCTGGTCTTAATTGAAT
TATCCTAATATCCCCAGGGGAACCGCTCCTCTCGCCTTTTTGGCGAAGGT
GAAATCGAAATTCCCTATTTCCCCTCTCCTGCCATTTGCCCTTTCCACCT
TTACCTCTTTTTTTCTTCCCCCCCTCCCTTTACAATTTCTTTACTCTTTC
CTTTACTTCACCTATTGCCCCCTCCCCCGACTTTTTATTTTTAATTTATT
CACCTTTTTTCTTN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAAAATTCTGCTTTTATTCATTTT
CAGCAGAGGAAATATAGAACCCCGAGTGTTTTCGCTTGTTTGGTTCATCT
AGATGCTGATAATGGAGAGGTGTCCTGTACCCGAGGAAGCTGCCTATCCC
CGTGGTCAGGGACGCCCTTTGAACTTGTCCCATGACTAATTTGTGGCTTC
TGTTCACACAGATCTATTCCTGGATAGAAGTCATATCTGAACAGCATCCT
GACATGCTCCAGAAAATCTACATCGGATCATCATTCGAGAAGTACCCACT
TTATGTTTTAAAGGTATGTGAGGAGAGGCATTTGCCGGGTCGGGGTCGGA
GATTAACTCGCCAATGGCGCTTGTTATGACCTCTGCTTTTTCTGTTGTTT
TTCTTCAGGAAGTATTTTTTTTATTTGACTTGCCCCTTACCTTTTATATT
CTGATACTTATGACTATCTTATCCTTAATTTTTTTTCTCTGATTATTGAT
TCTCTATAAATGCAACCCACCTCTACCGCTCCATTTTACTTGATTTTTTT
GTTTTCTCCCCAACTAATTTTTCTTCCTCTTTCCTTTTTTTCTTTTTTTT
TCCCTATTCCCCTTTTCTATATTTTTCTTCTCTTCTCCCTTCTTTTTATT
ATCTTTTTTTCCCTTCTACTCTCCTCTTTTCTCGTTTCGTCTCTCTCCTT
TCTTTCTACTTTTCTCCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_j10.b1 MSMg01no408_j10.b1 CHROMAT_FILE:
MSMg01no408_j10.b1 PHD_FILE: MSMg01no408_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:37 2005
         (249 letters)



>mm_chr14_75808696_75809344
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgccccacccttgttggtttcttctctgtacctaagtggtggtttatttaatttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccctgccccacccttgttggtttcttctctgtacctaagtggtggtttatttaatttgag 390

                                                                       
Query: 61  ctgaccctgacagaggactgagcgctgccttccctccctcaaatctgcctgattgtgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgaccctgacagaggactgagcgctgccttccctccctcaaatctgcctgattgtgcat 330

                                                                       
Query: 121 cagctgtgcatacctcagtggcttcaccctcctagaaagcagccttgtgtgctcagccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagctgtgcatacctcagtggcttcaccctcctagaaagcagccttgtgtgctcagccct 270

                                                                       
Query: 181 ttgtagatgcctgcagtggtccagctctgcagtaatgggttggacaggtgagtaaggtaa 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttggagatgcctgcagtggtccagctctgcagtaatgggttggacaggtgagtaaggtaa 210

                    
Query: 241 gcagagact 249
           |||||||||
Sbjct: 209 gcagagact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no408_j10.g1 MSMg01no408_j10.g1 CHROMAT_FILE:
MSMg01no408_j10.g1 PHD_FILE: MSMg01no408_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:37 2005
         (338 letters)



>mm_chr14_75664784_75665521
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaaaattctgcttttattcattttcagcagaggaaatatagaaccccgagtgttttcg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 accaaaattctgcttttattcattttcagcaggggaaatatagaaccccgagtgttttcg 260

                                                                       
Query: 61  cttgtttggttcatctagatgctgataatggagaggtgtcctgtacccgaggaagctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtttggttcatctagatgctgataatggagaggtgtcctgtacccgaggaagctgcc 320

                                                                       
Query: 121 tatccccgtggtcagggacgccctttgaacttgtcccatgactaatttgtggcttctgtt 180
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tatcccagtggtcagggacgccctttgaacttgtcccatgactaacttgtggcttctgtt 380

                                                                       
Query: 181 cacacagatctattcctggatagaagtcatatctgaacagcatcctgacatgctccagaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 cacacagatctattcctggatagaagtcataactgaacagcatcctgacatgctccagaa 440

                                                                       
Query: 241 aatctacatcggatcatcattcgagaagtacccactttatgttttaaaggtatgtgagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctacatcggatcatcattcgagaagtacccactttatgttttaaaggtatgtgagga 500

                                                 
Query: 301 gaggcatttgccgggtcggggtcggagattaactcgcc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcatttgccgggtcggggtcggagattaactcgcc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |