BAC Information

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BAC

Clone NameMSMg01-408O22
Chromosome14 (Build37)
Map Location 121,004,459 - 121,004,818
singlet/doubletsinglet
Overlap genenone
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
Downstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408O22.T7 (MSMg01no408_o22.b1)MSMg01-408O22.TJ (MSMg01no408_o22.g1)
ACCAG506536AG506537
length782778
length of high quality
(start - end)
408 (40 - 447)360 (69 - 428)
definitionCHROMAT_FILE: MSMg01no408_o22.b1 PHD_FILE: MSMg01no408_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:05 2005CHROMAT_FILE: MSMg01no408_o22.g1 PHD_FILE: MSMg01no408_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCAGGATCTCTTATGTCTCCTTTTTCATTTCTTATTTTGTTAATTAGGAT
AACAAAATTAACCTGTGCCTGTGCCCTCTGGTTAAGTCTGCCTAAGGGTT
TATCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTGCTTTGGTTGATT
CTTTGAATAGTTCTTTTTGTTTCTACTTGGTTGATTTCTGCCCTAAGTGT
GATTATTTCCTGCTGTCTACTCCTCTTGGGTGAATTTTCTTCCTTTTGTT
CTAGAGCTTGTAGGTGTGCTGTCAGGCTGCTAGTGCATGCTCTCTCTAGT
TTCTTTTTGGAGGCACTCAGGGCTATGATTTTTCCTCTTAGGACTGCTTT
CATTGTGTCCCATAAGTTTGGGTATGTTGCAGCTTTCTTTTTCACTAAAT
TGTATAAAATTCTTTTATTTCTTACTTTATTTCTTCCTTGACCCAGGCAT
CATTGATTACAATGTTTCTCAGTTTCCTTATGAATGTTGGCTTTCTATTA
ATTATGCTGTTTTTTGAAGATCTGTCTTTATTCCTGAAATGTATTCTGCC
AATATTTTCAATATTTCTTGTACTCCCCTCTCCGCCTTTTTTCGCCGCTC
TTTTTAACTTGTTTTCTCTTCCGCATTCTACTATTCTTGTACTTTTCTAA
ACAAAACCCAATTATTCCTTATTTTTCTCTTCTTTTATATAACTCTTCCC
CTCTACACTCGTCCTTCTATTTTCTCTCTTCN
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGATAAGTCACCCATGGTTCAGTCAATCTG
AGGAGATCTCCTTCCTGTTGTATTCCCTGTGGCTGAAGGACAATAAACAG
CCTTGTCTCTCTGCCCAGAAGTTCATAGATCAAGAGAGAGCCACACAGCT
AATGTCTTAGTTTTGGCTACTTATTGCTATGATGAAACACAAAGCAACTT
GGGAAGAAAGGGGTCTATTTGGCTTTTGCTTCTGCATCACTATTCCCCAT
AGAAGGAGATCAGGACAGAAACCTAGAGGCAGGAGCTGATGCAGAGGCCA
TGGATGGGTGCTGTTTACTGGCTTGCTCCTTCCTCATGGCTTGCTAAGTC
TGCTTTCTTATAAAATTCAGGACCACTAGCCTAGGGATGGTCCCACCCAC
AATGGGCTGAGCCCTCCTCCATCAATCACTAATTAAGAAAAAGCTCTATA
GCCTTGCCCACACCCTGACCTATAGAGGTATTTTTCTCAGCACATGTTCC
CTCCTCTCTGATTACTGCCATTTTTGTTTAGTTTACTTAATCCTTCTCTT
CTCCTTATCGATTCGTTAACTAATTATTATTTCTTCTACCATTTTCCTTA
CACTTTGATCCCTCTTGTATTTACCCTTCATACAAGTCGTTCTTACCCAC
AATTAGCTCTGTTTTTTACAAACATATCCTACCTTTTCTCACCTTCCATA
GCTTCTTTTCTTTTTTATCATCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_o22.g1 MSMg01no408_o22.g1 CHROMAT_FILE:
MSMg01no408_o22.g1 PHD_FILE: MSMg01no408_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:05 2005
         (360 letters)



>mm_chr14_121004259_121005018
          Length = 760

 Score =  688 bits (356), Expect = 0.0
 Identities = 359/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggataagtcacccatggttcagtcaatctgaggagatctccttcctgttgtattccct 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggataagtcacccatgtttcagtcaatctgaggagatctccttcctgttgtattccct 260

                                                                       
Query: 61  gtggctgaaggacaataaacagccttgtctctctgcccagaagttcatagatcaagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggctgaaggacaataaacagccttgtctctctgcccagaagttcatagatcaagagag 320

                                                                       
Query: 121 agccacacagctaatgtcttagttttggctacttattgctatgatgaaacacaaagcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccacacagctaatgtcttagttttggctacttattgctatgatgaaacacaaagcaac 380

                                                                       
Query: 181 ttgggaagaaaggggtctatttggcttttgcttctgcatcactattccccatagaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggaagaaaggggtctatttggcttttgcttctgcatcactattccccatagaaggag 440

                                                                       
Query: 241 atcaggacagaaacctagaggcaggagctgatgcagaggccatggatgggtgctgtttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaggacagaaacctagaggcaggagctgatgcagaggccatggatgggtgctgtttac 500

                                                                       
Query: 301 tggcttgctccttcctcatggcttgctaagtctgctttcttataaaattcaggaccacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcttgctccttcctcatggcttgctaagtctgctttcttataaaattcaggaccacta 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)