Query= MSMg01no409_k14.b1 MSMg01no409_k14.b1 CHROMAT_FILE:
MSMg01no409_k14.b1 PHD_FILE: MSMg01no409_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:06 2005
(458 letters)
>mm_chr14_40922908_40923765
Length = 858
Score = 743 bits (384), Expect = 0.0
Identities = 431/454 (94%), Gaps = 14/454 (3%)
Strand = Plus / Minus
Query: 5 gaattctcattctatgcctcaatgatgactgtaaacaaggtatttataatcataagcaca 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattctcattctaggtctcaatgatgactgtaaacaaggtatttataatcataagcaca 413
Query: 65 agattgttcaagaaatccttgaaattatttttcactatcactctgtactttcatacgtcg 124
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 412 agattgttcaagaaatgcttgaaattatttttcactatcactctgtacttttatacgtcg 353
Query: 125 tttacttgaagagatggtctcattgattattctacagtgttgtaaattggattagctcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttacttgaagagatggtctcattgattattctacagtgttgtaaattggattagctcct 293
Query: 185 tttcttgccattcacgtttcaaaactctaaaggttaatgctctaaatcctagatgtactt 244
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 tttcttgccattcatgtttcaaaactctaaaggttaatgctctaaatcctggatgtactt 233
Query: 245 ggaaatacacctttgtgttgaatagggttttgtttgtttgtttgtttgtttgtttgtttg 304
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 232 ggaaatacacctttgtgttgaatagggttttgtttgtttg---------ttgtttgtttg 182
Query: 305 ttttttgctctatttgattcaagtcaaagttatctgagaagagaggaccacgactttgaa 364
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 181 ---tttgctctatttgattcaagtcaaa--tatctgagaaaagaggaccacgactttgaa 127
Query: 365 aatgcccctataagatttcctttaagcaagtctatggaccattttcttgattaatgcttc 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 126 aatgcccctataagatttcctttaagcaagtctatgggccattttcttgattaatgcttc 67
Query: 425 atattgaatgtaccagaccatggggatgggtggg 458
||||||| ||||||||||||||||||||||||||
Sbjct: 66 atattgattgtaccagaccatggggatgggtggg 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_k14.g1 MSMg01no409_k14.g1 CHROMAT_FILE:
MSMg01no409_k14.g1 PHD_FILE: MSMg01no409_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:06 2005
(303 letters)
>mm_chr14_40741537_40742239
Length = 703
Score = 547 bits (283), Expect = e-160
Identities = 298/303 (98%)
Strand = Plus / Plus
Query: 1 ttagaaccatctcatcagctataaattgttttattttctgtaagttgaaagatagtagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaccatctcatcagctataaattgttttattttctgtaagttgaaagatagtagaa 260
Query: 61 aaagcatgttttacccaaattgaatgacatccaggttgggaacgttttaagacatataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcatgttttacccaaattgaatgacatccaggttgggaacgttttaagacatataaa 320
Query: 121 ggcaaatgcccacaatacaaaattagccagcctaaaatgtcaaatgctgcatactatgga 180
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct: 321 ggcaaatgcccacaatacaaaattagccagactaaaatgtcaaatgcttcatactatgta 380
Query: 181 tctatattctagaaagaagatctcttgtggcttctagaactacttgaatatcatatagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctatattctagaaagaagatctcttgtggcttctagaactacttgaatatcatatagat 440
Query: 241 atgaaaactggtatgattgctcacctcaattaaatttaaactgtggctttataatcttta 300
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 441 atgaaaactggtatgattgctcacctcaattagatttaaactgtggctttaaaatcttta 500
Query: 301 ttg 303
|||
Sbjct: 501 ttg 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
