BAC Information

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BAC

Clone NameMSMg01-410P04
Chromosome14 (Build37)
Map Location 80,403,731 - 80,404,197
singlet/doubletsinglet
Overlap geneOlfm4
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410P04.T7 (MSMg01no410_p04.b1)MSMg01-410P04.TJ (MSMg01no410_p04.g1)
ACCAG508077AG508078
length745756
length of high quality
(start - end)
448 (52 - 499)467 (83 - 549)
definitionCHROMAT_FILE: MSMg01no410_p04.b1 PHD_FILE: MSMg01no410_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:50 2005CHROMAT_FILE: MSMg01no410_p04.g1 PHD_FILE: MSMg01no410_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTTGTTCTGAGCCCCATTTTTTAATGGGGTTGTT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTGTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
TTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGTATCGA
TTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGCTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTCTAGCTCCCTTGTCGAAGAT
CACGTGATCATAGGTGCGTGGTCTCACTTCTGGCCTCCCAATTCTATTCC
TCTGACCTATTTGTCCGTCCTCACATTGTCACTTCGTCGTTTTTTCCTCC
TTTGGTTCGCATTCATCGTTTTACCTCTTGTTTGGCTGTCTTCCCCTCCA
GTTTCTTTTATTCTTCGACTATCACTTTTTTCTATTCCTTGCCCC
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGCAAAAATATCTC
TAATGGGAGACACTGATCAAACTTATGGACCGTTTTGATGTCAGCCGAGC
ACGCTGGGCTGATGATAAGCAGGATGGAGTCCACAGCGGTGGGACAGAGA
TGTTCAATAGAAGCCAGAGGAATGGCTGTCAGCAAGGCTCATAATTATTT
GCGTGTCTTTCAGGTGAACTTCAGGACTGAAAGTTGCTAGCTAGTGGCTT
CTAGTTGATTGTCTAAGGACTGTTTGATGATGTCCCCTGTTTCCTGAGCT
GACAGGGCTTCTCGGAGAACTCTAGGAATGGTCTACCCTGCCTTGTGAAG
CTAATTAACCTCCTCTTGTCAGTGCAATGCAAGATCTCTTCTTTGCTAGA
TAGTTATTATAATAAGGCATCTCTTCAAAAGCTTGTAAAAGACTTGGCAT
ACCTATGCAAGAGTCTTTCTGTCTTTAGATGGAGTGATAGATCTTAGTCC
AAGAGGATCCAGCCTCTCTGATGGACTCCTGGCATGTATTCTCCAGNCCT
TATTCATTCTTTGCAAAGACCCTTTCCCCTCCCACTCTAACCCCTTGCTC
CATGGGCAGCATAGGGTTGGCCCTATGCTTTTTTCCCCTGACCTTATGCT
GGAGGGACCTGAATCCCCAAGAAAGGGCAATGCCCGAAATTTTCTCGGGA
AGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_p04.g1 MSMg01no410_p04.g1 CHROMAT_FILE:
MSMg01no410_p04.g1 PHD_FILE: MSMg01no410_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:50 2005
         (467 letters)



>mm_chr14_80403531_80404397
          Length = 867

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%), Gaps = 2/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggagcaaaaatatctctaatgggagacactgatcaaacttatggaccgttttgatgtc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagcagaaatatctctaatgggagacactgatcaaacttatggaccgttttgatgtc 260

                                                                       
Query: 61  agccgagcacgctgggctgatgataagcaggatggagtccacagcggtgggacagagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccgagcacgctgggctgatgataagcaggatggagtccacagcggtgggacagagatg 320

                                                                       
Query: 121 ttcaatagaagccagaggaatggctgtcagcaaggctcataattatttgcgtgtctttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatagaagccagaggaatggctgtcagcaaggctcataattatttgcgtgtctttca 380

                                                                       
Query: 181 ggtgaacttcaggactgaaagttgctagctagtggcttctagttgattgtctaaggactg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 381 ggtgaacttcaggactgaaagttgctggctagtggcttctagttgattgtctagggactg 440

                                                                       
Query: 241 tttgatgatgtc-ccctgtttcctgagctgacagggcttctcggagaactctaggaatgg 299
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgatgatgtctccc-gtttcctgagctgacagggcttctcggagaactctaggaatgg 499

                                                                       
Query: 300 tctaccctgccttgtgaagctaattaacctcctcttgtcagtgcaatgcaagatctcttc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctaccctgccttgtgaagctaattaacctcctcttgtcagtgcaatgcaagatctcttc 559

                                                                       
Query: 360 tttgctagatagttattataataaggcatctcttcaaaagcttgtaaaagacttggcata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgctagatagttattataataaggcatctcttcaaaagcttgtaaaagacttggcata 619

                                                           
Query: 420 cctatgcaagagtctttctgtctttagatggagtgatagatcttagtc 467
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctatgcaagagtctttctgtctttagatggagtgatagatcttagtc 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)