BAC Information

Click to search

BAC

Clone NameMSMg01-411J09
Chromosome14 (Build37)
Map Location 51,736,814 - 51,737,230
singlet/doubletsinglet
Overlap geneGm75
Upstream geneOlfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1
Downstream geneRnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J09.T7 (MSMg01no411_j09.b1)MSMg01-411J09.TJ (MSMg01no411_j09.g1)
ACCAG508561AG508562
length783759
length of high quality
(start - end)
417 (76 - 492)240 (72 - 311)
definitionCHROMAT_FILE: MSMg01no411_j09.b1 PHD_FILE: MSMg01no411_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:41 2005CHROMAT_FILE: MSMg01no411_j09.g1 PHD_FILE: MSMg01no411_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCC
GCGGAATTCATATTTTCACCCGGATCTGAAGGCCCACCTAGAGGAGGTAT
GTCACTGGAGCTGCCATTGTCTTATCTTGTCCCTATACTCTTCTCCTTCC
TTCTCTGTCTACTTTCCACATTTCCCCACCACAATGCTCTGCCTAACTCT
TCCCTGAGGACAACAGAGCCAGCAGACTACAGACCAGCCCAGAGATTAGG
AGGCAAATAAACCCTCCTTTGAATGCTTTCTCTCAAACATTTTGTCACAG
TAGCAGAGAGCCGAGTCATGATTTTTTTTAATAAAAGTAGGTAAACAAGG
GAAGAATGTTATTGCAGGCAGACAACCCATAAACACGATTGTAATACCAA
GAATCAATGTGATTGATTGCAAAATACTGACAGACAATTGCAAAGCAGAA
GTAACAGTAACTATTGTAAGCAGGGGGTGGAGGGTGAAGGGTAAGTGTGC
CTCCATCCCTTCTCTCCTATTCTCTTTATTTATCTCCCCTCTTCCCCTCC
CTCTTATACTATTTTTTTATTATTCTCCCCTCTTCCCCTCCTCCTCCCTT
CACTCTTTTCCCCCCCCATTCTCCTTCTTTCCCCCTCTTACCTACCCTAC
CCTTCCCTTTCCTCTTTTTTTTTTCTCCCTCTTCCCCCCCTTTTTTTTCT
ACCCTCTTCTCCTTTTTTCCCCTTTTCCCCTATTTCTTACCCCTTTTTCC
TTTCCCTTTATTCCCTTTCCCTTCTTCTCTTTG
ATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAGTACACAGCTTTACATCTTTTTGTG
CTGTGTCTTGAGACAGGATCTCTCTGTGACCCAGGCGCTACTAGGACTAA
TGATTCTGCTACTGCAGGCCTCTGAATGCTGTGACTACAGGCTTGAGACA
CGATACCCAGTTTAGATACAGACACCGCCCTCTTGTCTTTAAACCTCTTT
CAGCCTTAGATCTGGGAGAGGGTTCAGAGAAGACAATTGCTCTCTTAGTG
CTCTTATGACTATGCTGGGTTGTTAAAAAAAAGTCTTGGATTTTTTTATT
AAAACAAAAAGATTATTTTAAAAATTGCATTCATTCATTTGTTTATTTTT
GAGACAGGATCTTACTTTGTAGTCCTGGCTGCCCTGAAGCTCACTATATC
AGGCTGGCCTCAAGCTCCACCTGTCTCCTCTGCCTCCCAATTGGTGGGAT
CAAAGGCATATACCACTAAACTTAGCCTATATTTGTGTGTGTGGTGTGTC
TATTCACTTGTGTGGAAGTCAGTGCACAAATTTTGGCAATTGGTTTTCTT
CGACCATGTGGCTCCTGGCGATTAAACACCCCTTGTCAACTTTTGACCTA
CGCTTCTTTAAACTGTATTTATTCCCCCCCCTTCCTGTTCCCTTTATGCT
TTCATGTTCCCCTCTCATTCCACTCTTTTTTTCCTTCCATCTCCCTTTCC
TTCGTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j09.b1 MSMg01no411_j09.b1 CHROMAT_FILE:
MSMg01no411_j09.b1 PHD_FILE: MSMg01no411_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:41 2005
         (417 letters)



>mm_chr14_51736614_51737430
          Length = 817

 Score =  754 bits (390), Expect = 0.0
 Identities = 410/424 (96%), Gaps = 14/424 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaggcccacctagaggaggtatgtcactggagctgccattgtcttatcttgtcccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctgaaggcccacctagaggaggtatgtcactggagctgccattgtcttatcttgtcccta 558

                                                                       
Query: 61  tactcttctccttccttctctgtctactttccacatttccccaccacaatgctctgccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tactcttctccttccttctctgtctactttccacatttccccaccacaatgctctgccta 498

                                                                       
Query: 121 actcttccctgaggacaacagagccagcagactacagaccagcccagagattaggaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actcttccctgaggacaacagagccagcagactacagaccagcccagagattaggaggca 438

                                                                       
Query: 181 aataaaccctcctttgaatgctttctctcaaacattttgtcacagtagcagagagccgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aataaaccctcctttgaatgctttctctcaaacattttgtcacagtagcagagagccgag 378

                                                                       
Query: 241 tcatg----atttttttt---aataaaagtaggtaaacaagggaagaatgttattgcagg 293
           |||||    |       |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcatgaaaaa-------tgggaataaaagtaggtaaacaagggaagaatgttattgcagg 325

                                                                       
Query: 294 cagacaacccataaacacgattgtaataccaagaatcaatgtgattgattgcaaaatact 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagacaacccataaacacgattgtaataccaagaatcaatgtgattgattgcaaaatact 265

                                                                       
Query: 354 gacagacaattgcaaagcagaagtaacagtaactattgtaagcagggggtggagggtgaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacagacaattgcaaagcagaagtaacagtaactattgtaagcagggggtggagggtgaa 205

               
Query: 414 gggt 417
           ||||
Sbjct: 204 gggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)