Query= MSMg01no411_k24.b1 MSMg01no411_k24.b1 CHROMAT_FILE:
MSMg01no411_k24.b1 PHD_FILE: MSMg01no411_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:49 2005
(477 letters)
>mm_chr14_30165775_30166650
Length = 876
Score = 814 bits (421), Expect = 0.0
Identities = 460/473 (97%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 5 gaattccacaggagactctggagactggcgtgagctttgggtgcatgggcagctctgtgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattccacaggagactctggagactggcgtgagctttgggtgcatgggcagctctgtgg 617
Query: 65 gtgctttctaccattagctggatttgttgaaattttcagatgggcctctggtatgggcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgctttctaccattagctggatttgttgaaattttcagatgggcctctggtatgggcct 557
Query: 125 tgtcactattttgtacacaaggaaagaaagcacaggctagaggattgcctcccagtagtt 184
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 556 tgtcactattttgtatacaaggaaagaaagcacaggctagagggttgcctcccagtagtt 497
Query: 185 gatgcagttttgtaaaaggcctcacctctcgccacagttccagttcccgtacagttgttc 244
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 496 gatgcagttttgtaaaaggtctcacctctcgccacagttccagtccccgtacagttgttc 437
Query: 245 agtgttatgggagtctagactagagaacttttgtaaaagacagaagcgggtaagctccct 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 436 agtgttatgggagtctagactagagaacttttgtaaaagacagaagcaggtaagctccct 377
Query: 305 gtttccccatgagaggggagcagggagcagttcctctattgttttctggtctgtatgctc 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gttttcccatgagaggggagcagggagcagttcctctattgttttctggtctgtatgctc 317
Query: 365 atcattgttgatacatttacctattcataccggggccaatgagaaattccttccagacct 424
|||| |||||||| ||||||||| |||||||| |||||||||| ||||||||||||||||
Sbjct: 316 atca-tgttgatatatttacctagtcataccgcggccaatgagcaattccttccagacct 258
Query: 425 gaatgtggaggctgcacattgccccgttttgaagtgttgtcttcaggggtgaa 477
|| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 gattgtggaggctgcgcattgccccgttttgaagtgttgtcttcaggggtgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_k24.g1 MSMg01no411_k24.g1 CHROMAT_FILE:
MSMg01no411_k24.g1 PHD_FILE: MSMg01no411_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:49 2005
(425 letters)
>mm_chr14_30035396_30036220
Length = 825
Score = 814 bits (421), Expect = 0.0
Identities = 424/425 (99%)
Strand = Plus / Plus
Query: 1 attacatatgttttgggggtagggtttttgtcagaactcccactaatgaattgttcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacatatgttttgggggtagggtttttgtcagaactcccactaatgaattgttcagcc 260
Query: 61 ttcatggaagtacaataatgacaataattctcaggaagttgttggttcttgctgtctttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatggaagtacaataatgacaataattctcaggaagttgttggttcttgctgtctttc 320
Query: 121 atttgttagccccaaatacaccttctctgcattacttagattaaggactttgtgaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgttagccccaaatacaccttctctgcattacttagattaaggactttgtgaaggag 380
Query: 181 gcctttgaaagagaaagaacttgggcaacagtgcagcagggcgtgaaatcccaatctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctttgaaagagaaagaacttgggcaacagtgcagcagggcgtgaaatcccaatctgga 440
Query: 241 tggttggctgtgttgtataaaattcatccaggaatggagaagctcagcacagaggtaggg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tggttggctgtgttgtataaaattcatccaggaatggagaagcccagcacagaggtaggg 500
Query: 301 aacagagcagtggagttcacagtagctgatggaaagtttcccaaccatatcatgacagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagagcagtggagttcacagtagctgatggaaagtttcccaaccatatcatgacagtt 560
Query: 361 ggcctatgcagggctccgaatgaaatccattatgttgcccacagagcatgggattctggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcctatgcagggctccgaatgaaatccattatgttgcccacagagcatgggattctggc 620
Query: 421 agact 425
|||||
Sbjct: 621 agact 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
