BAC Information

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BAC

Clone NameMSMg01-412C09
Chromosome14 (Build37)
Map Location 73,241,187 - 73,241,710
singlet/doubletsinglet
Overlap geneLOC100043721
Upstream geneLOC668482, LOC675957, Fndc3a
Downstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412C09.T7 (MSMg01no412_c09.b1)MSMg01-412C09.TJ (MSMg01no412_c09.g1)
ACCAG508991AG508992
length734735
length of high quality
(start - end)
531 (49 - 579)497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no412_c09.b1 PHD_FILE: MSMg01no412_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:25 2005CHROMAT_FILE: MSMg01no412_c09.g1 PHD_FILE: MSMg01no412_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTCTTTCTATGTTGAGCACATCTAAACTGTAATAAATAAT
AAAAATGAGATTAGTCCCTAAGGTGTCTCTATACAATTTGGAATCTTAGA
CCATTGCTATAAATTCTATCTGTGTACATTGAAACCCAATGTTCAAAATG
GAAAAATAGATGTGTTATAACTATAAACATACAGATGCTCATGATTATTT
ATACTTATATACTTAGGAGCTTTTGATATAAACTCATGTACCATAGAAGA
AGCGGTAGCTAGTAGAAATGGTAGGTTACATAAAATCTTAATATGGTGTG
TTTTCAAGGGATTTGACTCGATGAGCCTCATCAAAGAATATTTATTTATA
TTGACTAGAAGTAAAAAAGCTTATTTTATGTTCTAAGCAGAGTTTAGATA
AACGGTGCCAATCACAGGGTATCCTTGTGACATTATCAGACTCCAACCAA
AGCTTCCCACAGTTTACTTCTCCGAATGGTCATTCTCTAAGGCATCTCCT
CTTCCCTCAGGTTCTCTGAAACTGGTATTCCTGAAGATCAAAATCTACTT
AACATCCTAAGCCACTAGACTCAAAATGCAGCCCATTAAAATGTCCCGAG
TCCAATATCCCTTCATGACAAAAGTCCTGATCATGCTCTGATTGCATCAT
GTTTTATGTATGCCTATTCTAGTGACCCATCTTN
TTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGTCTTACCATGTTTCCCA
CCATCCTGAGTCAGCTGGCTTGATAGAAAAATGGAATGACCTTTTGAAGA
CACAGTTTCATCTCCAATTCGACTGTAGGGCTGGGACAGGGTTCTCCAGA
AGGCAGTATATGCTTTGAATCAATGTCCAATATTCGGTAGTTTCGTCCAT
AGCCAGGATCCACTTGGAGGAAAAGGGAATAGTTTCACTCACTATCACTC
TTAGGAAAATTATTTACTTCTTGTTTCCACAACCTTAAGTTCTGCTGCCC
TAGAAGTTTTGGTTGCCAGAGAGGAGGGTGCTTCTGCCAGGAAAGACAGA
CAACAAACATTCCACTGAACTGCAAGCTCAGACTTCCCTCTGGCCACTTT
GGGCTTGTGACACCATTAGACCAACAGGCTAAGGAAGGGGATAACAGTGA
TTGATGGGTGACTGATCCACATTACCAAGGGGAAATTGGATTGATTTTCC
ATGGTAGAGGTAAGAACAACTGTGTATGAGTACGGGAAAACCTTTAGGGC
ATCTCTTGGTGCTGCCATGTCCTGTGATTAAAGTCTATGCTAAATTATTT
GTTTTAATTTAGGCAGGATGAAAACGTACTACACCCTTTCAGATTGAAGT
ATTGGCCTTTCCTCCAGGAAAAATTCTACATGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_c09.b1 MSMg01no412_c09.b1 CHROMAT_FILE:
MSMg01no412_c09.b1 PHD_FILE: MSMg01no412_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:25 2005
         (531 letters)



>mm_chr14_73240983_73241914
          Length = 932

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%), Gaps = 1/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcttt-ctatgttgagcacatctaaactgtaataaataataaaaatgagat 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaattcacttctttaatatgttgagcacatctaaactgtaataaataataaaaatgagat 669

                                                                       
Query: 64  tagtccctaaggtgtctctatacaatttggaatcttagaccattgctataaattctatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tagtccctaaggtgtctctatacaatttggaatcttagaccattgctataaattctatct 609

                                                                       
Query: 124 gtgtacattgaaacccaatgttcaaaatggaaaaatagatgtgttataactataaacata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtgtacattgaaacccaatgttcaaaatggaaaaatagatgtgttataactataaacata 549

                                                                       
Query: 184 cagatgctcatgattatttatacttatatacttaggagcttttgatataaactcatgtac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cagatgctcatgattatttatacttatatacttaggagcttttgatataaactcatgtac 489

                                                                       
Query: 244 catagaagaagcggtagctagtagaaatggtaggttacataaaatcttaatatggtgtgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catagaagaagcggtagctagtagaaatggtaggttacataaaatcttaatatggtgtgt 429

                                                                       
Query: 304 tttcaagggatttgactcgatgagcctcatcaaagaatatttatttatattgactagaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttcaagggatttgactcgatgagcctcatcaaagaatatttatttatattgactagaag 369

                                                                       
Query: 364 taaaaaagcttattttatgttctaagcagagtttagataaacggtgccaatcacagggta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taaaaaagcttattttatgttctaagcagagtttagataaacggtgccaatcacagggta 309

                                                                       
Query: 424 tccttgtgacattatcagactccaaccaaagcttcccacagtttacttctccgaatggtc 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 tccttgtgacattatcagactccaaccaaagcttcccacagtttacttctcccaatggtc 249

                                                       
Query: 484 attctctaaggcatctcctcttccctcaggttctctgaaactgg 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attctctaaggcatctcctcttccctcaggttctctgaaactgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space:   480362
Effective search space used:   480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)