BAC Information

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BAC

Clone NameMSMg01-413A13
Chromosome14 (Build37)
Map Location 54,275,575 - 54,276,010
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124
Downstream geneA430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413A13.T7 (MSMg01no413_a13.b1)MSMg01-413A13.TJ (MSMg01no413_a13.g1)
ACCAG509662AG509663
length733745
length of high quality
(start - end)
157 (244 - 400)556 (65 - 620)
definitionCHROMAT_FILE: MSMg01no413_a13.b1 PHD_FILE: MSMg01no413_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:35 2005CHROMAT_FILE: MSMg01no413_a13.g1 PHD_FILE: MSMg01no413_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATCATTGTGCTT
CACACAGAATTTCTACTGTTATGGGAAACTCCATCATTTTGTCTCTCTCT
TTTCTTTCTTTCTAAAGTTGAGACAGTGCCTCTGTATGTTGCCCTTGTCC
ATACTAGAACTCTATTTGCAAACCAGGCTGGCCCCAAACTCACAGAGATA
TACTTTGCCTCTACCTCTGCCTCTGCCTCTGCCTCTGCCTCCTGCCTCTG
CCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC
TCTGCCTCTGTCTCTGCCTCTTGAGTCACAATGCCAAACTATCATTTTTC
TTTTAAATCTTTCAAGATGATCACATGAGGTTCAACATTTTTAGAGTGAG
ATTTACATAGGTGTTAGATTGACTATGTGGATGCTATGGCCCGGCCATCT
TGTCACAAAACCAGAGACCACACCATCTTTACTTCTAGTAATTCTCTCCT
AAAAACTTGCTTTGTCTTGTATGACATCCTGTATCACATTTGCCACAGTA
AAAAGCAAACCACAATAAGCTTATTCAAAGATTTTGCCCAAGTATAGTTC
TGACCTCAAGATGGCAGTGCTTGCATTATTCCTGTCTCCAGTTACTGTTT
GTGCGTGCGTGTGTATGTGTGCGCATATGTGCGTTTCTCGCGTGACCTTA
TTCATACTCTGTTCTTCATATTGTCCCCCCCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGCATATGTGATTTCTTACATGGCATTTCCTTAC
ATGAGACTAAGCCAGCCAAATATGCCACATAAATAGGGAAATGCCCCATG
CAGAGGACTATTGTCAGTTGATAACTTCTGGGAATAGCAAATGACAAATC
AATCTTTCTTGAAGGTGTAGATGTTCGTAGGTTTCCCATGCCCATACTGA
TATAAGTATTGACCACACTTACTGGAATTGATATCTGTTGCTATGGCTAA
TATCTTGACCTTTTCTAACAAACAAACAAACAAGCAAGCAAACAAAACAA
CAACTTGAGAAAGAAAAAGCTTTATTTTAGCGTATAGTTCCAGATGATAG
TCCATCACTGAGGAAAGTCAGTGCAGAAACTTAAAAGCAGCTTTGCCTGC
TATTTTATCCAGGATTACCTCTGGCCAAGCAGTGCACTTTACAGCCAAAG
AGATACAGCACGAACAAAGGATGTTGTTTACTCTCTGGCTTGCAGGTGAT
CTTATACACATAGATTTCTTATACAATTTANGACCGTCTGCCTAGGATGA
TCTGGCCCATAGTGGACTAGACCTCCTGGCAATTATTAACAATCAAGACT
ATTTACAAAGACNAAGTTATGAACATCCCCCCTCAAATANNGACAATATC
ACAATTGGATCAGATACAAAGAATAAGGTGATAAAAGCTGCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_a13.g1 MSMg01no413_a13.g1 CHROMAT_FILE:
MSMg01no413_a13.g1 PHD_FILE: MSMg01no413_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
         (556 letters)



>mm_chr14_54275053_54276010
          Length = 958

 Score =  698 bits (361), Expect = 0.0
 Identities = 417/440 (94%), Gaps = 10/440 (2%)
 Strand = Plus / Minus

                                                                       
Query: 123 gcaaatgacaaatcaatctttcttgaaggtgtagatgttcgtaggtttcccatgcccata 182
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 958 gcaaatgacaaatcaatctttcttgaaggtgtagatgttcataggtttcccatgcccata 899

                                                                       
Query: 183 ctgatataagtattgaccacacttactggaattgatatctgttgctatggctaatatctt 242
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 898 ctgatataaatattgaccacacttactggaattggtatctgttgctatggctaatatctt 839

                                                                       
Query: 243 gacc----ttttctaacaaacaaacaaacaagcaagcaaacaaaacaacaacttgagaaa 298
           ||||        | ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 838 gaccaaaa----caaacaaacaaacaaacaaacaagcaaacaaaacaacaacatgagaaa 783

                                                                       
Query: 299 gaaaaagctttattttagcgtatagttccagatgatagtccatcactgaggaaagtcagt 358
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggaaaagctttattttagcgtatagttccagatgatagtccatcactgaggaaagtcagt 723

                                                                       
Query: 359 gcagaaacttaaaagcagctttgcctgctattttatccaggattacctctggccaagcag 418
           ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| 
Sbjct: 722 gcagaaacttaaaagcagccttgcctgctattttattcaggattaactctggccaagcaa 663

                                                                       
Query: 419 tgcactttacagccaaagagatacagcacgaac-aaag-gatgttgtttactctctggct 476
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 662 tgcactttacagccaaagagatacagcacgaacaaaagagatgttgtttactctctggct 603

                                                                       
Query: 477 tgcaggtgatcttatacacatagatttcttatacaatttangaccgtctgcctaggatga 536
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 602 tgcaggtgaccttatacacatagatttcttatacaatttaggaccgtctgcctaggatga 543

                               
Query: 537 tctggcccatagtggactag 556
           ||||||||||||||||||||
Sbjct: 542 tctggcccatagtggactag 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 958
Length adjustment: 10
Effective length of query: 546
Effective length of database: 948
Effective search space:   517608
Effective search space used:   517608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)