BAC Information

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BAC

Clone NameMSMg01-413H18
Chromosome14 (Build37)
Map Location 22,093,118 - 22,277,913
singlet/doubletdoublet
Overlap geneAdk
Upstream geneNudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413H18.T7 (MSMg01no413_h18.b1)MSMg01-413H18.TJ (MSMg01no413_h18.g1)
ACCAG510008AG510009
length748754
length of high quality
(start - end)		634 (55 - 688)533 (60 - 592)
definitionCHROMAT_FILE: MSMg01no413_h18.b1 PHD_FILE: MSMg01no413_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:10 2005CHROMAT_FILE: MSMg01no413_h18.g1 PHD_FILE: MSMg01no413_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,093,118 - 22,093,751)(22,277,493 - 22,277,913)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
TGCACCTCTATCAGGAATCTGCCTCTCAAATAGGGGCTATTTAAATACAC
AGATTAATCTGTCTATAAGACTTTTGATAAGGCTGATTTCAATAGTGAAT
TAGATAAAGTGATTAGAAGTAAGTTTATAGCTTAAACATTTTTATTCCAT
TTAAATAGAAAAAAAGCAGCTTGTTAATCCAAACCTAATACACAAATTCT
CAATAAATTCGGCCAGGTGACTGTGGAAATGAATGATTCTCTTTTATTAC
GGATTTAAGACCAATCACTTGTCTAGTGTTCATTCAAACGGCTCGGCCTT
CTTTGCAGGAGAGGGAGAAGCATCCTGTGGCTCTTTCTCAGGAGCCCGTC
CAGGCAGTCTCACTTTTAATTATACATTTTGACTTTCCAAGAGGGAGGTA
TAAGGCACAGCTTTGAAAACTCTATGTGTAAGTCAATCCATTTTTCAAAG
AGAACTGATCAAGCTTGCCAGTAGATCAGATTGTGATATACTAAGGGCAG
CTCAGCTGTGTGTGGGAAAATTCCGGGAGACGAGGGTGGTAAAATGTGTA
GGGTCAGAAGGACTTTATATCCCATGCCTTGGAATTCCAAATGGTTGGGA
GCCATACAAAACCTTTTAAGAAGTAGAGGAATATAAGGCTGTGTTTGAGA
GTTCTTATTCCCTTATGCTAATGAATTCAGCTCCATATTGAAAGATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTGCCTTTCTCCGCATTGCTAGGATCACAAGAGCCTGTTC
CACCATGCCAGACTTTTGTTTGCTTGTGTGTTTGCTTTTTGAGACAGGGA
TTCTCTGTGTAGCCCCGGCTATTCTGGTACTCATTTTGTAGACTAGGCTG
GTCTTGAACTCACAGAGATCTGCGTGCCTCTGCCTGGGATTAAAGTGCTG
GAATTAAAGGTTCCTGCCACCATGCCCTGTGCATGCCAGATGTTTTCTGT
GGCTGCTGGAGGTAAAGCTCAAGCCCTTGTGTTTGTATGGCTAGCATCTG
AATAGCCATCTTGTCAACCCCAACAGACCCACAAATAAGAAAAGATAAGA
AATTGCAGATCTCCTCAGAGAGGCTAGTCATTCGGAGATCTAGCTGTAAC
TGTGTTATCCCTCTAAGAACCACATAGGAGGAACACTGGATCCCTTGGCT
GATGGTCCCTGTGCCTTGTTCCCAGCTGTGGGACATCCTGTCCTTCCGTT
CCTATTTCCTCCTTGGCTTCTATCANGATTTGATTTTGAGACCTTGCTAA
TAGCTGGCTTCCTGACCAATCACAGGTGTGGGAAATGTTGACGGTTATCC
CAAAAATGGATCAGCAGTCTCCCTGAAGCTGGAGTCCCCCACCGACATCT
GGGGAGATTCCAACAGAACTCTTAATGTTTGTCTTTAACAACCCCCGGTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_h18.b1 MSMg01no413_h18.b1 CHROMAT_FILE:
MSMg01no413_h18.b1 PHD_FILE: MSMg01no413_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:10 2005
         (634 letters)



>mm_chr14_22092918_22093951
          Length = 1034

 Score = 1195 bits (618), Expect = 0.0
 Identities = 630/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctatcaggaatctgcctctcaaataggggctatttaaatacacagattaatctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctatcaggaatctgcctctcaaataggggctatttaaatacacagattaatctgtct 260

                                                                       
Query: 61  ataagacttttgataaggctgatttcaatagtgaattagataaagtgattagaagtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagacttttgataaggctgatttcaatagtgaattagataaagtgattagaagtaagt 320

                                                                       
Query: 121 ttatagcttaaacatttttattccatttaaatagaaaaaaagcagcttgttaatccaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatagcttaaacatttttattccatttaaatagaaaaaaagcagcttgttaatccaaac 380

                                                                       
Query: 181 ctaatacacaaattctcaataaattcggccaggtgactgtggaaatgaatgattctcttt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatacacaaattctcaataaattcgaccaggtgactgtggaaatgaatgattctcttt 440

                                                                       
Query: 241 tattacggatttaagaccaatcacttgtctagtgttcattcaaacggctcggccttcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattacggatttaagaccaatcacttgtctagtgttcattcaaacggctcggccttcttt 500

                                                                       
Query: 301 gcaggagagggagaagcatcctgtggctctttctcaggagcccgtccaggcagtctcact 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggagagggagaaccatcctgtggctctttctcaggagcccgtccaggcagtctcact 560

                                                                       
Query: 361 tttaattatacattttgactttccaagagggaggtataaggcacagctttgaaaactcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaattatacattttgactttccaagagggaggtataaggcacagctttgaaaactcta 620

                                                                       
Query: 421 tgtgtaagtcaatccatttttcaaagagaactgatcaagcttgccagtagatcagattgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtaagtcaatccatttttcaaagagaactgatcaagcttgccagtagatcagattgt 680

                                                                       
Query: 481 gatatactaagggcagctcagctgtgtgtgggaaaattccgggagacgagggtggtaaaa 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 gatatactaagggcagctcagctgtgtgtgggaaaatgccgggagacgagggtggtaaaa 740

                                                                       
Query: 541 tgtgtagggtcagaaggactttatatcccatgccttggaattccaaatggttgggagcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtagggtcagaaggactttatatcccatgccttggaattccaaatggttgggagcca 800

                                             
Query: 601 tacaaaaccttttaagaagtagaggaatataagg 634
           || |||||||||||||||||||||||||||||||
Sbjct: 801 taaaaaaccttttaagaagtagaggaatataagg 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_h18.g1 MSMg01no413_h18.g1 CHROMAT_FILE:
MSMg01no413_h18.g1 PHD_FILE: MSMg01no413_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:11 2005
         (533 letters)



>mm_chr14_22276981_22277913
          Length = 933

 Score =  799 bits (413), Expect = 0.0
 Identities = 419/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  gagcctgttccaccatgccagacttttgtttgcttgtgtgtttgctttttgagacaggga 91
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gagcctgctccaccatgccagacttttgtttgcttgtgtgtttgctttttgagacaggga 874

                                                                       
Query: 92  ttctctgtgtagccccggctattctggtactcattttgtagactaggctggtcttgaact 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ttctctgtgtagccccggctattctggtactcattttgtagactaggctggtcttgaact 814

                                                                       
Query: 152 cacagagatctgcgtgcctctgcctgggattaaagtgctggaattaaaggttcctgccac 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cacagagatctgcgtgcctctgcctgggattaaagtgctggaattaaaggttcctgccac 754

                                                                       
Query: 212 catgccctgtgcatgccagatgttttctgtggctgctggaggtaaagctcaagcccttgt 271
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 catgccttgtgcatgccagatgttttctgtggctgctggaggtaaagctcaagcccttgt 694

                                                                       
Query: 272 gtttgtatggctagcatctgaatagccatcttgtcaaccccaacagacccacaaataaga 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gtttgtatggctagcatctgaatagccatcttgtcaaccccaacagacccacaaataaga 634

                                                                       
Query: 332 aaagataagaaattgcagatctcctcagagaggctagtcattcggagatctagctgtaac 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaagataagaaattgcagatctcctcagagaggctagtcattcggagatctagctgtaac 574

                                                                       
Query: 392 tgtgttatccctctaagaaccacataggaggaacactggatcccttggctgatggtccct 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgtgttatccctctaagaaccacataggaggaacactggatcccttggctgatggtccct 514

            
Query: 452 g 452
           |
Sbjct: 513 g 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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