BAC Information

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BAC

Clone NameMSMg01-413P11
Chromosome14 (Build37)
Map Location 99,529,773 - 99,530,017
singlet/doubletsinglet
Overlap geneD14Ertd581e
Upstream geneDach1, LOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
Downstream geneLOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413P11.T7 (MSMg01no413_p11.b1)MSMg01-413P11.TJ (MSMg01no413_p11.g1)
ACCAG510373AG510374
length736743
length of high quality
(start - end)
273 (36 - 308)245 (66 - 310)
definitionCHROMAT_FILE: MSMg01no413_p11.b1 PHD_FILE: MSMg01no413_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:49 2005CHROMAT_FILE: MSMg01no413_p11.g1 PHD_FILE: MSMg01no413_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTG
GTGCCTGGAGAGATGACTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGA
GGTCCCGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT
AATGGGATCCAATGCCCTCTTCTGGTGTGTATGAAGACAGCTACAGTGTA
CTCATATACATAAAAATAAATAAATAAATAAATATTTCTAAATATAATAG
ACACAAACTCTTAAAAAAAAAAGAATTCAGTTGGGCCAATTGTGATGATA
GATACATTGTTTTTTCTAAACATGACAACACTTTCCATTTTAAAGAATGT
AATATAGGCCGACAACACTTTCCATTTTAAAGAATGTAATATAGGCCCGG
CAGTGCTTTAATCCCAGCACTTGGGAGGCAGAGGGAGGGGGATTTCAGAG
TTGGAGGCCAGCCTGGTCTACAGAGTGTGTTCCAGGACAGCCAGGGCTAT
ACAGAGAAACCCTGTCTCGAATAAAACAAAAATAAGAAGGAGGGAACTCA
AGTGAGCAGCATCCTCATGATGGAACAAATTGACATGACGATAATTCAAA
TGCGCTTATAGGATAGAAGAACTGTTTAAATTACTTAGACGAATTTGATT
TATGTGCACTTCCCGAAGTTATTAAAGATCTTCTAGACATACTGTTTACC
TTAATTGAGTAAACCTCTGTAGTCCTTTGGCTGGAG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTTAGAGGATTCCAGCCTGGAAGCCTAAACATA
TACCTGGACCCATTCTGATTTATTTGTGTTTTTACTGGTTTTGTCGGGAA
GTAGCAGAAAACGCATATAGGAACGGTCTCAGGCAGGGCCACTGTTGCTG
TGATGACACATGTCGGACAAGAGCAGAGGAAAGGGTTTATTTGCTTACAC
TTGTACGTCACCTTTCGTCATCACCAAAGGAAGTCAGGAAGTCAAACAGG
GCAGGAACTAATTTTTAGCCATGGAGAGGTGCTGATTTGCTGCTTGCTTC
TCGTGGCTAACTCAGTTTGATTTCTTTTTGTTTGTTTGCTTGGTTTTTTT
ATTTGTTTTCTTTTTATTGAATATTTTCTTTATTTACATTTCAAATGTTT
TCTCCTTTCCAGGTCTCCCCTTCAGGAACCCCCATCCCATCCTCCCATTC
CCCTGCCTCTATGAGGGTGTTCACCCACCCACCCACTCCCTTCCTCCTAC
CCTGGNATTCCCCGACATTGGGGCATCGAACACCCTCAGGCCCAAGGGTC
GCTCCTCACTGATGTCCAACAACACCATCCTCTGCCAATATGCTGCAGGA
TCCATGGGCCCCTACAATGGACTCTTTGATTGGGGGTCCGGCCCCTGGAG
CTCCAAAGAAATCTGTGTGTGTTTGAACCTGTTTCTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_p11.g1 MSMg01no413_p11.g1 CHROMAT_FILE:
MSMg01no413_p11.g1 PHD_FILE: MSMg01no413_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:49 2005
         (245 letters)



>mm_chr14_99529573_99530217
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttagaggattccagcctggaagcctaaacatatacctggacccattctgatttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttagaggattccagcctggaagcctaaacatatacctggacccattctgatttattt 260

                                                                       
Query: 61  gtgtttttactggttttgtcgggaagtagcagaaaacgcatataggaacggtctcaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtttttactggttttgtcgggaagtagcagaaaacgcatataggaacggtctcaggca 320

                                                                       
Query: 121 gggccactgttgctgtgatgacacatgtcggacaagagcagaggaaagggtttatttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggccactgttgctgtgatgacacatgtcggacaagagcagaggaaagggtttatttgct 380

                                                                       
Query: 181 tacacttgtacgtcacctttcgtcatcaccaaaggaagtcaggaagtcaaacagggcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacacttgtacgtcacctttcgtcatcaccaaaggaagtcaggaagtcaaacagggcagg 440

                
Query: 241 aacta 245
           |||||
Sbjct: 441 aacta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)