BAC Information

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BAC

Clone NameMSMg01-414B17
Chromosome14 (Build37)
Map Location 97,834,605 - 98,004,859
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414B17.T7 (MSMg01no414_b17.b1)MSMg01-414B17.TJ (MSMg01no414_b17.g1)
ACCAG510481AG510482
length782784
length of high quality
(start - end)		523 (50 - 572)511 (77 - 587)
definitionCHROMAT_FILE: MSMg01no414_b17.b1 PHD_FILE: MSMg01no414_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:00 2005CHROMAT_FILE: MSMg01no414_b17.g1 PHD_FILE: MSMg01no414_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,834,605 - 97,835,123)(98,004,349 - 98,004,859)
sequence
NNNATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAAGTATGTATCTTCAGAAAGATCTTCTAGGTACATTTGTT
CTTAGTTGCGTGCAGTCTATTTAGAGAATAAGTGACATTTGAATGTGAGG
ATGCATTCTGTTTTTGTTTTTGTTTTGTTTTTTTCTTTATCCAGTGTATT
TTTTTTATGTCCAGCTCATAATTCTGTCTTGAGAAACAAAATAATTACAG
GAAACACTCAGAACTTTAATTTCTGCATTCTGAGGGGAGAAGGAGCTAGT
AAAAGGAGAGTAGAAATCCATTTCCGTATATTTACTTTCTCTTTCACAGT
TTGGCAGCTCCTTTATTTAGAGGCAAGAAGGGAGAAACAATGACCTTAAA
GTACACATGATGCTTTGGAACTTGTGATTTCAGGGGATGAATAAGTCTAA
AAATCTCTCTCCTTGAAATTTGTTTCCAGAATGTTAACTGCAATGCGAGT
TATATATAGCAGTAAATTCATGCTTAATTTGTGCAAAAATCATGGTGTGA
TGAATACAATTAAGCGCCTCAGAGGGAATAATTATATTACTGCATAAAGC
TGGTGGTTCTCAAATTGCTTGGTGCCTGGACTTTAAATTGGGCTGATTTC
CTGTTGGGAAAGTCACCCTTTGCGGCAAACAAACGCAGCAGCAAAGGTGT
AGGTTTCAAGTCCCAGGGAAAGCAAGCTTTTCTTGAACAAAGCCATAATG
GGGTCCCTTATAAAAAAAGGAACTCCCCCCCA

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGATTTTAATAGCTGAGTAGCA
CTCCATTGTGTAAATGTTAGGTGGATATTTTTTTATTTCTTCAATAATTA
TTATGTATTCTGTTTTTTCCCTGTAACATTTATTATAGGAAGGTAAATTT
TATTTCCTTCCTTACCAGGTGGCAGATAATAAACACAATATGAAAGACCA
TGGAAATAAGGAACCTTTATTAAAGATTTCTGAACTGACATGGTTAACTT
AGGCATATATATATATATATTCTGCATTGTATTCATGGGTAGAAAGTAGA
TAACCAAGAGAAAATTCATCAGGGTTTAGTGGTAGGAAGAGTTGATAAAA
TGAAAGACTTTTAAACAAATGACAAGAACTACTGTTTACTAATAAATCTG
ATGGTAAATTTTAAAAAGTAATTTAATTCTTCTTTTTACATAAATTTTCA
TTTTATTTTATTGAGATGTAAATTTCTGTTTAATGCTATGTCTAGTCCCC
CTGCAGTGGTTCAGGAAGAAATGACATTTTTCATCGACTCTTCTCTGTAA
GAAGTATCCATTTACCTAGACAATTAGGCACCATATTATTTTTTTAAGTT
TCCCGGGATCATTCATCTTTTTTATCTGTCTGGCTGCCCATCCGTCTGGC
TTACCATTATTTTAAACCTTAGTGTTATAGCCCATTTTGGTGGCCAAAAT
ATAAAATTTGGGAGGGGTGTATTCCTGGTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_b17.b1 MSMg01no414_b17.b1 CHROMAT_FILE:
MSMg01no414_b17.b1 PHD_FILE: MSMg01no414_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:00 2005
         (523 letters)



>mm_chr14_97834401_97835323
          Length = 923

 Score =  988 bits (511), Expect = 0.0
 Identities = 517/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaagtatgtatcttcagaaagatcttctaggtacatttgttcttagttgcgtgc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagtatgcatattcagaaagatcttctaggtacatttgttcttagttgcgtgc 264

                                                                       
Query: 65  agtctatttagagaataagtgacatttgaatgtgaggatgcattctgtttttgtttttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtctatttagagaataagtgacatttgaatgtgaggatgcattctgtttttgtttttgt 324

                                                                       
Query: 125 tttgtttttttctttatccagtgtattttttttatgtccagctcataattctgtcttgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgtttttttctttatccagtgtattttttttatgtccagctcataattctgtcttgag 384

                                                                       
Query: 185 aaacaaaataattacaggaaacactcagaactttaatttctgcattctgaggggagaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacaaaataattacaggaaacactcagaactttaatttctgcattctgaggggagaagg 444

                                                                       
Query: 245 agctagtaaaaggagagtagaaatccatttccgtatatttactttctctttcacagtttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctagtaaaaggagagtagaaatccatttccgtatatttactttctctttcacagtttg 504

                                                                       
Query: 305 gcagctcctttatttagaggcaagaagggagaaacaatgaccttaaagtacacatgatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagctcctttatttagaggcaagaagggagaaacaatgaccttaaagtacacatgatgc 564

                                                                       
Query: 365 tttggaacttgtgatttcaggggatgaataagtctaaaaatctctctccttgaaatttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttggaacttgtgatttcaggggatgaataagtctaaaaatctctctccttgaaatttgt 624

                                                                       
Query: 425 ttccagaatgttaactgcaatgcgagttatatatagcagtaaattcatgcttaatttgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccagaatgttaactgcaatgcgagttatatatagcagtaaattcatgcttaatttgtg 684

                                                  
Query: 485 caaaaatcatggtgtgatgaatacaattaagcgcctcag 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaaaatcatggtgtgatgaatacaattaagcgcctcag 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_b17.g1 MSMg01no414_b17.g1 CHROMAT_FILE:
MSMg01no414_b17.g1 PHD_FILE: MSMg01no414_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:00 2005
         (511 letters)



>mm_chr14_98004213_98005123
          Length = 911

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagattttaatagctgagtagcactccattgtgtaaatgttaggtggatatttttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atagattttaatagctgagtagcactccattgtgtaaatgttaggtggatatttttttat 588

                                                                       
Query: 61  ttcttcaataattattatgtattctgttttttccctgtaacatttattataggaaggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttcttcaataattattatgtattctgttttttccctgtaacatttattataggaaggtaa 528

                                                                       
Query: 121 attttatttccttccttaccaggtggcagataataaacacaatatgaaagaccatggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 attttatttccttccttaccaggtggcagataataaacacaatatgaaagaccatggaaa 468

                                                                       
Query: 181 taaggaacctttattaaagatttctgaactgacatggttaacttaggcatatatatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 taaggaacctttattaaagatttctgaactgacatggttaacttaggcatatatatatat 408

                                                                       
Query: 241 atattctgcattgtattcatgggtagaaagtagataaccaagagaaaattcatcagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atattctgcattgtattcatgggtagaaagtagataaccaagagaaaattcatcagggtt 348

                                                                       
Query: 301 tagtggtaggaagagttgataaaatgaaagacttttaaacaaatgacaagaactactgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tagtggtaggaagagttgataaaatgaaagacttttaaacaaatgacaagaactactgtt 288

                                                                       
Query: 361 tactaataaatctgatggtaaattttaaaaagtaatttaattcttctttttacataaatt 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tactaataaatctgatggtaagttttaaaaagtaatttaattcttctttttacataaatt 228

                                                                       
Query: 421 ttcattttattttattgagatgtaaatttctgtttaatgctatgtctagtccccctgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttcattttattttattgagatgtaaatttctgtttaatgctatgtctagtccccctgcag 168

                                          
Query: 481 tggttcaggaagaaatgacatttttcatcga 511
           |||||||||||||||||||||||||||||||
Sbjct: 167 tggttcaggaagaaatgacatttttcatcga 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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