BAC Information

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BAC

Clone NameMSMg01-414D14
Chromosome14 (Build37)
Map Location 109,320,706 - 109,320,957
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414D14.T7 (MSMg01no414_d14.b1)MSMg01-414D14.TJ (MSMg01no414_d14.g1)
ACCAG510571AG510572
length1,581779
length of high quality
(start - end)
---252 (74 - 325)
definitionCHROMAT_FILE: MSMg01no414_d14.b1 PHD_FILE: MSMg01no414_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:11 2005CHROMAT_FILE: MSMg01no414_d14.g1 PHD_FILE: MSMg01no414_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAGGTAGTAAGATGATGTGAGTGTCTTCGCTGTACTCCATTTTGTGCG
CTCATCTCTACTCTTCGCTCGCTGTGCTAGTGCGCGCTCGTACATGTACT
ATATCTGTGCATGTNCTGTGTGCCTCATCGTAGATGCAGACATAAGATCA
AAATATGATCGTAAGAGCGATAGTACGCGGATGTGTACAGCCGGCATAGA
TCACATAAATAGTATAGACTATCATTGATATGAGATGCTGTTAGGCTTGA
NCGTCGGCTCGATGTCGTTATTAGATATANTGCACTTTTACTATTTCTTG
ACTCGATTCTCGTATATCACTACGNTACGTCGGTCGGTGTCTGTGTCCGT
GCGTGTTGCGTATAGAGCGAAGGANGATAGGCGTGCGCTCACAGCACTAC
GATCAGCAGTCTACAGCATCGTTCTTCGTGTTCCCCGTNTGTATATCTTG
GCGTCGTATGACGCATACCTGACTATGTTTACTGACGATATGCCACTTAN
GTTATGCGTCTCACTGCTCCGTCGATAATCGATATAGTGTCGACATGAGT
GTAGCGCTGTAGTGCTATGACGTGCGTAGACGTATGTCTACTACACGCCG
TTGTTGCGTCTCTCTGAGTTGANATACTCAGTCCTCGCGCGAGCGCGCGT
GTCGATGTATCGTGCACGCAACACAATATTACGCGTCGACGTCGCGATAG
CTTTGTATAGTGTGTAATCGTGTATGATTAGTATCGTGCGCTGCAGNGTC
TCTGTTGCATGCTGATGTGATATTTGGCAGTCATTGTATGTGTTTGACTT
ATCGTATTAGGTGCGGTATCCTGACGAGAGTTAGGAGTGGACGGATGTGT
GTGTGTGATCGGAGGTGTCGCTGNGTTATTATAAGTCGTANCTGTCTGAN
CTGTTGACTTCTACTGACTCATCTATGTGTGAANGCAGAGCACGTGACAG
ACAATGGGTGACCGGTGTGTCNGTTCGCGCGCTCTACTACACTGCTAGCA
TGATGATACATCACTAGCATACAGTACATCTGTTGCACGTAACTGCAATA
CTCTAGATATTATTTACTACTGTCCTCGTATATCGATNTCGTGCTACAGT
TATACACGCTCGGCATTATACATCACGTATACATGATATCAACTGATTAA
GATGCGCGCGTGGACGAGGGCGNAAGAGATATTGAAATATTTATGAGTTG
AATTATGTATTCGNTTGAGCGGTCGTCGTATACTTCTGACGCCGCGCTCA
ATAACACTCACGCGCTATATGTATAATACTNTATGTCAACTGATTAATAG
ATGACTGCATACCATATTACATGATGTTATCGTAAACAAGCGCGTGACGG
CGTTGAGTTAGTATTAGTGCTGCAGTCGATCGTGTACTGTCGTGCATCGC
ACGTATCTGTGTCTTAGTTGATCTGTACCTACACCAGCGTGTCAGACAGA
ATGAAGGATAGAGATGATGTGTGCGTCGTTCCGTAGCACGCGATGTAGTA
GCATANTATANTCAGNGCTAGTGTCTGTCTCGACGCCGGCTGTATCTTAC
ATGATCTATAAAGCACTGAGACCGTCTCATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCATTTTTCACAGAGAATAATTTAA
TTATGAACTATTCTCTAAATTTTCAAAATAAATAGTTATTAAAATAATCA
AATTACATATATAAGGAAATTAAGTACAAGATATATTCTAATCATAGAAA
TAGAATATGTTTTAACTAATTTTAGGCATCTCTTTTATCTAGTTTATAAA
GCAGAACCATAAGATAACAAAGCTGAATCATAATTTAAATAATTAAGAAA
GAGTTCATGAATTTGAGAGGGAATGGGTTTTAACATTCAAAATAACTTTA
GAAATTTAATAATTTGTGATTTAAAATATTGTTTTATTTACTTTTATATG
TTGATGAATGTTTTGGCTGAATTTATGTCAGTGTGCCACATGTACGTTTA
GATGCTTAAGAAGTCAGAATAGAGTGTTGAATTCCTGTAATTGGTGTTTT
CAATGGTAGTGAGTCAATCCTGGGACCACTGCAAGAGCAACAGCGCTCTT
AACATCTATCTAGTAGCATAATTCATGACTTTAANAAATATATTGCACTA
AGAAAGTACTCATGTTAATTTATTTAAGTTAGTGAAAAATATTTGTCAAA
ATACCAAAGACAATATCCGATATCTTTTTGAATTATCCAAAAAAAATCTT
AAAGCTCAATAAAGCAAGGAAGCTTAATTGTCATTATGATGTGGAAATTA
TTAAATATCCTTTCTTCCGTTGTGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_d14.g1 MSMg01no414_d14.g1 CHROMAT_FILE:
MSMg01no414_d14.g1 PHD_FILE: MSMg01no414_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:11 2005
         (252 letters)



>mm_chr14_109320506_109321157
          Length = 652

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatttttcacagagaataatttaattatgaactattctctaaattttcaaaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcatttttcacagagaataatttaattatgaactattctctaaattttcaaaataaat 260

                                                                       
Query: 61  agttattaaaataatcaaattacatatataaggaaattaagtacaagatatattctaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttattaaaataatcaaattacatatataaggaaattaagtacaagatatattctaatc 320

                                                                       
Query: 121 atagaaatagaatatgttttaactaattttaggcatctcttttatctagtttataaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 atagaaatagaatatgttttaactaattttaggcatctcttttatctggtttataaagca 380

                                                                       
Query: 181 gaaccataagataacaaagctgaatcataatttaaataattaagaaagagttcatgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccataagataacaaagctgaatcataatttaaataattaagaaagagttcatgaatt 440

                       
Query: 241 tgagagggaatg 252
           ||||||||||||
Sbjct: 441 tgagagggaatg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)