BAC Information

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BAC

Clone NameMSMg01-414I15
Chromosome14 (Build37)
Map Location 103,069,255 - 103,223,151
singlet/doubletdoublet
Overlap genenone
Upstream geneUchl3, Lmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414I15.T7 (MSMg01no414_i15.b1)MSMg01-414I15.TJ (MSMg01no414_i15.g1)
ACCAG510812AG510813
length762779
length of high quality
(start - end)
250 (76 - 325)499 (77 - 575)
definitionCHROMAT_FILE: MSMg01no414_i15.b1 PHD_FILE: MSMg01no414_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:37 2005CHROMAT_FILE: MSMg01no414_i15.g1 PHD_FILE: MSMg01no414_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,222,902 - 103,223,151)(103,069,255 - 103,069,752)
sequence
NGGGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCCATAGCAAAGCCAAGACACCAAGGCGCTAGGGAGCTTTCA
NAGACAGTAGAAAGGATGACGTCAGATATATGAGACAATAAACGTTGTTC
CCAGTAAATAATAGCAAGAGTAGCATCAATCTGAGGCATAGCTGACAGCT
GCTGGGATGATGTCCTTTCAGACATAGCATGGGCAGCAGCCTGTGCTAGT
TTGTGATGTTGATAGTTTTTGTGATCATTACTAACCAGGCAATCATGTAG
AAGATCTTTTCTTCTTAGAACCTTCNGGTCNTATTTATGTTTTTGTGTTC
TGAGTTAAGGTTCAGACACTAGTGCCAGCAAATACTTTATTTTAAACCTA
TTCCACAGCTGAAGAGTTTTCTCTACCCTATACCCATTTTCTGTATGTGC
AGAATGTGGTCCACCAGACAGGACTGCTAGTCGGTGTTCACCAGGCTCTA
GAAATAGACATTTTATAACTTTCTTATAGAGTGCTGTCCAGGCAGATGGC
ATGGACCATGCTGAGGTAGGTATGCACTATTTATTCTATACTGTTATACT
CTTAACCCCCATTCTACTGAATCAATTGGATGATATTGATTGGTTATACA
CAAGGCACATTTGTTTTTTTTTTTTTTTTAAACTCTGTCATCATTCTCAC
CCCCAGGTTTTTGACAGTTTTCTACTTTCTTACTTCGTATTACATTAATT
TGTTTTCTTGTN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTTGCATTTATGAAATTGTT
CAAAGAATAAAAAAAATACAATATGTGAAGATAAATTGAGTCAGAAATTC
TCAATATAATAAGCAGAGCTGAGGTCTGGTGAATAATTTAATTAAGAATA
CACACACTGTGTAAATGGCGAGACTCCTGTTCTTTCTTCTAGAAGTCTGG
TGTGAACCCTTCAGACAGAAATCTGACCAAGTCCAGAGAAAGAAACATAT
ATTCTGGTCATTGATGGATTGATGCACCATCTATTTATTAATACTTTTTT
CATGTTTATGCATAGTGACTAAACAGCCTCTGGCCGTCTAGTTCTTAAAA
AGCAGTGGAAGCCAAGAATCATGAGTCACTCCAGGAAAGTTCCTAGCTTG
AAAGGGAGAGCCCAAGATTTCCCCAAAATACAAATTAACAAAAGGAAACG
AACACTTTGATATGCAAACATAAATTTTGAATTATCGTTGAAATCCTCAA
AGAGATGAATAAACAGATCTAATTCATTGGAAACGAAATGAAGGCTGTCC
TGGCTAATTTTTGCCAACGTGACACAAGAGAACTGGGAAGAGGAACCTCA
TTTGAGAACTGCCCCCATCAAATGGTCTCCCCCTCCACCGGGGGAATTTT
TTTCTTAATTATTGCACCCCAAGGAGGGTCCTGGCATTTTGTGTGGGGTC
CCCTCTGGGCGGATGACCCTGGGTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_i15.b1 MSMg01no414_i15.b1 CHROMAT_FILE:
MSMg01no414_i15.b1 PHD_FILE: MSMg01no414_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:37 2005
         (250 letters)



>mm_chr14_103222702_103223351
          Length = 650

 Score =  404 bits (209), Expect = e-117
 Identities = 241/254 (94%), Gaps = 8/254 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaccaaggcgctagggagctttcanagacagtagaaaggatgacgtcagatatatgaga 60
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 450 acaccaaggcgctagagagctttcaaagacagtagaaaggatgacgtcagatatatgaga 391

                                                                       
Query: 61  caataaacgttgttcccagtaaataatagcaagagtagcatcaatctgaggcatagctga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 390 caataaacgttgttcccagtaaataatagcaagagtagcatcagtctgaggcatagctga 331

                                                                       
Query: 121 cagctgctgggatgatgtcctttcagacatagcatgggcagcagcctgtgctagtttgtg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cagctgctgggattatgtcctttcagacatagcatgggcagcagcctgtgctagtttgtg 271

                                                                       
Query: 181 a---tgttgatagtttttgtgatcattactaaccaggcaatcatgtagaagat-cttttc 236
           |   ||  | ||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct: 270 actctg--g-tagtttttgtgatcattactaaccaggcaatcatggagaagatgc-tttc 215

                         
Query: 237 ttcttagaaccttc 250
           ||||||||||||||
Sbjct: 214 ttcttagaaccttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no414_i15.g1 MSMg01no414_i15.g1 CHROMAT_FILE:
MSMg01no414_i15.g1 PHD_FILE: MSMg01no414_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:37 2005
         (499 letters)



>mm_chr14_103069055_103069952
          Length = 898

 Score =  818 bits (423), Expect = 0.0
 Identities = 480/499 (96%), Gaps = 1/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttttgcatttatgaaattgttcaaagaataaaaaaaatacaatatgtgaagataaat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 actttttgcatttatgaaattgttcaaagaataaaaaaa-tacaatatgtgaagataaat 259

                                                                       
Query: 61  tgagtcagaaattctcaatataataagcagagctgaggtctggtgaataatttaattaag 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 tgagtcagaaattctcaatataataagcagagctgaggcctggtgaataatttaattaag 319

                                                                       
Query: 121 aatacacacactgtgtaaatggcgagactcctgttctttcttctagaagtctggtgtgaa 180
           ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||
Sbjct: 320 aatacacacactgtgtaaatggcgagattcctgttctttcccctagaagtctggtgtgaa 379

                                                                       
Query: 181 cccttcagacagaaatctgaccaagtccagagaaagaaacatatattctggtcattgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccttcagacagaaatctgaccaagtccagagaaagaaacatatattctggtcattgatg 439

                                                                       
Query: 241 gattgatgcaccatctatttattaatacttttttcatgtttatgcatagtgactaaacag 300
           ||||||||||||| |||||||||||| |||| ||||||||||||||| |||| |||||| 
Sbjct: 440 gattgatgcaccagctatttattaatgctttcttcatgtttatgcattgtgattaaacaa 499

                                                                       
Query: 301 cctctggccgtctagttcttaaaaagcagtggaagccaagaatcatgagtcactccagga 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctcttgccgtctagttcttaaaaagcagtggaagccaagaatcatgagtcactccagga 559

                                                                       
Query: 361 aagttcctagcttgaaagggagagcccaagatttccccaaaatacaaattaacaaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagttcctagcttgaaagggagagcccaagatttccccaaaatacaaattaacaaaagga 619

                                                                       
Query: 421 aacgaacactttgatatgcaaacataaattttgaattatcgttgaaatcctcaaagagat 480
           ||||||||||||||||||||| |||||||||| ||| ||| |||||| ||||| ||||||
Sbjct: 620 aacgaacactttgatatgcaagcataaattttaaataatcattgaaaccctcatagagat 679

                              
Query: 481 gaataaacagatctaattc 499
           | |||||||||||||||||
Sbjct: 680 ggataaacagatctaattc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space:   434232
Effective search space used:   434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)