BAC Information

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BAC

Clone NameMSMg01-414L02
Chromosome14 (Build37)
Map Location 98,018,478 - 98,018,859
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414L02.T7 (MSMg01no414_l02.b1)MSMg01-414L02.TJ (MSMg01no414_l02.g1)
ACCAG510928AG510929
length803813
length of high quality
(start - end)
387 (44 - 430)257 (74 - 330)
definitionCHROMAT_FILE: MSMg01no414_l02.b1 PHD_FILE: MSMg01no414_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:49 2005CHROMAT_FILE: MSMg01no414_l02.g1 PHD_FILE: MSMg01no414_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCATTCTGATTCCTCGGCTGTCTAAGTTCTGAGTGAGGAACCTTCA
TTCCTGCTCAGGCTGGATGAAGAAAACAGACCTATGGGTAAGTCATAGTA
TCCATCCATTATACATGATCTGGGGGCAACAAAAGAGGCCTTTTGAACCC
GAATAGTGGGAATTGCTCAGGTTTTTTTTTTTTTAGTTTAAATTAGAATT
TTCAGATACATGAGTAAAATGTTTAATAAAAAAAAAAGTTAAATGAAACA
ATAATCAGCATTCCAATTCTTTGAAGCTTGTATGTAAATGTATGGTCCAG
TTTGCTCACTGTGAGGGCTCGCTGTAAGGTTTCTATCTATATACACAGAG
CTAGGAAGATCAAACCAGGAGGACTGTGTTCTGGTCCAGTTTATAAACTA
AAAGTTGTGATACTTCCCCTGCTTATTCTTATTTCCGAGAGTTTGGTTTA
TTGTGCTATTTGTACCGCACCTTGACAATTGTTGAACTATTACTCATCTT
TCACCCAATATCCACTAATGCTTCCCTTCCGTTTTACTCCTTGGCTCCTC
GTTCTCCTGCCTTCCCCTTCCTGTTTTTATTCTCATCTTACTCTCTTGTA
TACTTTTGGTCACGACCCACTCTATGGTCTTTCTTATTGTCAGCCCCCTT
TATAATCTATTCCCTATTTCCCCCCTTTCTCTTTCTATCCACTCATCCCC
TTTTTTTCTTCCTACTTATACTTCACTTCTATTTCTTTTATTCCCCTCTT
CAT
AATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCCAATCCAGTAGTTATCTGAAATTCTACATGAT
TGTGTATATTGACAAATTGCCCTTTTCTAAAGAAGAAGATGCCTATAAAA
GAGTAACAAGCTTACAGAGCACCAAGTGGAGGAAATCAGAAAAAGATGTT
CCCTTGCCACATACATATTCAAAATAATAAATGATAAAGAATACTAGAAG
CTATACAAAAAGACCATATAACATATAAAGTCAAAGCTATTTGAATTATA
CCTGACTTCTACAGGAAACCCTACAAGCCAGATAATAGATGTCATATGGC
TCTAAAAGAACACAGATCCCAGCCCACAGTATTATACTAAAATTTTCAAT
CACCATAGAAGGAGAAAACAAGACATTCTATGACAAAAGCAAAATTAACC
TATATCTATCCTCAAAATCATACTTAAAGCCTGTAATAGGAAGAAAATTT
TCAACCCAATGAGGCTGACTACCGCCACAAAAACAGGCAGTAAATAATTT
TACCCCAGAAAAACCTAAATAATGGAATCACACATCCAAACACTAAAACC
TACTCCCTGGCACTACCCCCCCCCCCTTATACCACCCTTAAATACAACTA
TCCATCATCCTCAAAATTTATTCCCAAGGTGACGGGGGTAATCTCCCATA
TCTTTCCATTCTCATTAAAAGTTCCCCTTCATAACTCCCCTTGGCTTATA
TTTCCTTGATATTCCTTAAACACACCTCATCCTTTTGGGCTTTCCTACCT
ACTCCTCCTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_l02.b1 MSMg01no414_l02.b1 CHROMAT_FILE:
MSMg01no414_l02.b1 PHD_FILE: MSMg01no414_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:49 2005
         (387 letters)



>mm_chr14_98018274_98019059
          Length = 786

 Score =  687 bits (355), Expect = 0.0
 Identities = 376/383 (98%), Gaps = 1/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccattctgattcctcggctgtctaagttctgagtgaggaaccttcattcctgc 64
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaattctccattctgaatagtcggctgtctaagttctgagtgaggaaccttcattcctgc 527

                                                                       
Query: 65  tcaggctggatgaagaaaacagacctatgggtaagtcatagtatccatccattatacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcaggctggatgaagaaaacagacctatgggtaagtcatagtatccatccattatacatg 467

                                                                       
Query: 125 atctgggggcaacaaaagaggccttttgaacccgaatagtgggaattgctcaggtttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atctgggggcaacaaaagaggccttttgaacccgaatagtgggaattgctcaggtttttt 407

                                                                       
Query: 185 tttttttagtttaaattagaattttcagatacatgagtaaaatgtttaataaaaaaaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttttttagtttaaattagaattttcagatacatgagtaaaatgtttaataaaaaaaaaa 347

                                                                       
Query: 245 gttaaatgaaacaataatcagcattccaattctttgaagcttgtatgtaaatgtatggtc 304
           ||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||
Sbjct: 346 gttaaatgaaacaataatcagcattccaattctttgaagc-aggaagtaaatgtatggtc 288

                                                                       
Query: 305 cagtttgctcactgtgagggctcgctgtaaggtttctatctatatacacagagctaggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cagtttgctcactgtgagggctcgctgtaaggtttctatctatatacacagagctaggaa 228

                                  
Query: 365 gatcaaaccaggaggactgtgtt 387
           |||||||||||||||||||||||
Sbjct: 227 gatcaaaccaggaggactgtgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)