Query= MSMg01no416_l08.b1 MSMg01no416_l08.b1 CHROMAT_FILE:
MSMg01no416_l08.b1 PHD_FILE: MSMg01no416_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
(560 letters)
>mm_chr14_118805950_118806909
Length = 960
Score = 1002 bits (518), Expect = 0.0
Identities = 548/558 (98%), Gaps = 4/558 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcaggcttgccactgcatccttatagtctctccctccccttctcacacagctt 64
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 760 gaattcctcaggcttgtaactgcatccttctagtctctccctccccttctcacacagctt 701
Query: 65 tgtttgttagagttgttatgctcctctaaaacctcatcttaacacgactgtttcatctac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgtttgttagagttgttatgctcctctaaaacctcatcttaacacgactgtttcatctac 641
Query: 125 aaagggctcccattccaaagtcctggggattatggtgggacttcaacacatcgctctgtt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 640 aaagggctcccattccaaagtcctggggattatggtgggacttcaacacatctctctgtt 581
Query: 185 agaaacattcaaccggtaaaacatcatatacataatatacaattgatacattttatcaga 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agaaacattcaactggtaaaacatcatatacataatatacaattgatacattttatcaga 521
Query: 245 tttactgttcttactgcctgtccttcttcacaaaataaattctacaagaaatgacttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 520 tttactgttcttactgcctgtccttcttcacaaaataaattctacaagaaatgac-tttt 462
Query: 305 tctc-tttt-gttgctgatgaaacccaaggccgtaatggttttcgacaactggtagacct 362
|| | |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 461 tc-cattttcgttgctgatgaaacccaaggccgtcatggttttcgacaactggtagacct 403
Query: 363 tctgtgatggatgctgactatccctgtgtgaacaggccattcagtaagatcgttccactc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctgtgatggatgctgactatccctgtgtgaacaggccattcagtaagatcgttccactc 343
Query: 423 tcccagctctaatggtgcagccactaagcacctttctaaagaaaacatggaactgctgtt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcccagctctaatggtgcagccactaagcacctttctaaagaaaacatggaactgctgtt 283
Query: 483 ggagtcttccagtcatctagtggttacatttcccatggaaagctcactcgggacgctcag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggagtcttccagtcatctagtggttacatttcccatggaaagctcactcgggacgctcag 223
Query: 543 cctccagtaagtcctcag 560
||||||||||||||||||
Sbjct: 222 cctccagtaagtcctcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_l08.g1 MSMg01no416_l08.g1 CHROMAT_FILE:
MSMg01no416_l08.g1 PHD_FILE: MSMg01no416_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
(287 letters)
>mm_chr14_118657698_118658384
Length = 687
Score = 509 bits (263), Expect = e-148
Identities = 281/287 (97%)
Strand = Plus / Plus
Query: 1 ccatcaagtgatctgtgagggaatttccaggtggccatgacgtgacagagcagaatgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcaagtgatctgtgagggaatttccaggtggccatgacgtgacagagcagaatgacg 260
Query: 61 ggctacacgggctaaaggtggatatcctgggactcagacccacagtggtgtagaaggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctacacgggctaaaggtggatatcctgggactcagacccacagtggtgtagaaggtgt 320
Query: 121 tatcatttaagtctgagcagtcctcacaggctcacggcttgaaggacaaatttaaagatt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tatcatttaagtctgagcagtcctcacaggctcatggcttgaaggacaaatttaaagatt 380
Query: 181 gtagtggtgcaggaggtgaggcaggggttgacagaagaaaggtccactgggtggaccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gtagtggtgcaggaggtgaggcaggggttgacagaagaaaggtccactgggtgaaccttt 440
Query: 241 caacattatttcttctcctggttttggtctgctccctctgtgtgggc 287
|||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 441 caacattacatccactcctggttttggtctgctccctctgtgtgggc 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
