BAC Information

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BAC

Clone NameMSMg01-416O13
Chromosome14 (Build37)
Map Location 13,761,566 - 13,762,114
singlet/doubletsinglet
Overlap genenone
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822
Downstream geneLOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416O13.T7 (MSMg01no416_o13.b1)MSMg01-416O13.TJ (MSMg01no416_o13.g1)
ACCAG512614AG512615
length698715
length of high quality
(start - end)
608 (18 - 625)549 (56 - 604)
definitionCHROMAT_FILE: MSMg01no416_o13.b1 PHD_FILE: MSMg01no416_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:38 2005CHROMAT_FILE: MSMg01no416_o13.g1 PHD_FILE: MSMg01no416_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTGCGAGAGGATCCGCGGAATTCTTTCTTTTGCTCTATACCCCA
TATTTTAATAGGATTATTTGGATTTCTGGAGTTTATCTTCTTCAGTTCTT
TGTATATATTGAATGTTACCCCTTTATCAGATTTAGGATTGGTAAATATA
TTTTGCCAATCTGTTAGGTGCCTTTTTGTCTTATTGACAGTGTCCTATCC
TTAGCCTTACAGAAGCTTTACAATTTTATGAGGTCCCATTTGTTAATTCT
TGATCTTAGAGCACAAGCCATTGGTGTTCTGTTCAAAAATCTTTCTCCTG
TGACCACATCTTCGAGGGTTTTCCTCACTTTCTCCTCTATAAGTTTCAGT
GTCTCTGGTTTTATGTGGAGTTCCTTGATCCATTTAGACTTGAGCTTTGT
ACAAGAAGATAAGAATGGATCAATTTGTTCTTTCACCTGAACATCGGGGA
GGGCTCCAAGGTCCCAAGGGAGACCACTCTGGAGAGAGAAATCCAGGAAA
GAAATCAGGAACCATAGATATGAGCATCACCAACAGAATACAAGAGATGG
AAGAGAGAATCTCAAGTGCAGAAGATTCCAAAAAAAAAAAAAAAATGCGG
ACACAACAATCAAAGAAAATCCAAAATTTTTTTAGATCCTAACTTAAAAC
ACCCAGGAAATCTAGGACACAATGAGAAGATCATACCTTAGGATAATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGGAACTCTGTTCAGGACCACCTTGGACTCACTGCACAGCCACTT
TACGTCTTGCTGCCTGGTGCAGTTGTGAGATGGGTGGAAGATGCGTGATC
TTTTGTAATGGCTCTCAAAAGGATTCCTAGATATTTGGGACTTTTGATAT
CTCTAAATATTTGTGCCACTTGAAACACGAACACTATATAAGCAGGGGCT
GAGGAGACAGCTCAGCCTGTCAAGTCCCTGTCATAAAACCATGAGGACCC
GAGTTTGGAATGCTAGAACCCACATAAGAGCTGGGCTCGGGCATACACTT
GGAGCCCTAGCCCTGGTGGCAGGAGGACCACTGGAGCTCATTTGCAGGCA
AACTCAGTGGATAAACCTTGTTCAGAAAAGTGAGGTGGTAGGCAATGGAG
CAAGACATTTGCTGGTCACCTGCAGTTTCCACAGACAAGCAGCTGTTAAA
GAAACATAATTTACCTTACTTCATTATTTCCCTAGTTTAGTGAACAGGAA
TTGATCCACAGTTAAAATTCTAACTGTATTCATTTTGGGGTATAAAATTG
GGAGAAACATTGCATCTTTCCCTCTAGGCTCATAATCTTGGGGTGGTCTG
AAAATAAAGGATCAATCTTCATTCCCCACATCTCTATCAACTTGAATTGC
TAATGATGAAAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_o13.g1 MSMg01no416_o13.g1 CHROMAT_FILE:
MSMg01no416_o13.g1 PHD_FILE: MSMg01no416_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:38 2005
         (549 letters)



>mm_chr14_13761366_13762314
          Length = 949

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaactctgttcaggaccaccttggactcactgcacagccactttacgtcttgctgcct 60
           |||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aggaaccctcttcaggaccaccttggactcactgcacagccagtttacgtcttgctgcct 260

                                                                       
Query: 61  ggtgcagttgtgagatgggtggaagatgcgtgatcttttgtaatggctctcaaaaggatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ggtgcagttgtgagatgggtggaagatgcgtgatcttttgtaatggctctcaaaaggact 320

                                                                       
Query: 121 cctagatatttgggacttttgatatctctaaatatttgtgccacttgaaacacgaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagatatttgggacttttgatatctctaaatatttgtgccacttgaaacacgaacact 380

                                                                       
Query: 181 atataagcaggggctgaggagacagctcagcctgtcaagtccctgtcataaaaccatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atataagcaggggctgaggagacagctcagcctgtcaagtccctgtcataaaaccatgag 440

                                                                       
Query: 241 gacccgagtttggaatgctagaacccacataagagctgggctcgggcatacacttggagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacccgagtttggaatgctagaacccacataagagctgggctcgggcatacacttggagc 500

                                                                       
Query: 301 cctagccctggtggcaggaggaccactggagctcatttgcaggcaaactcagtggataaa 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 cctagccctggtggcaggaggaccactggagttcatttgcaggcaaactcagtggataaa 560

                                                                       
Query: 361 ccttgttcagaaaagtgaggtggtaggcaatggagcaagacatttgctggtcacctgcag 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgtccagaaaagtgaggtggtaggcaatggagcaagacatttgctggtcacctgcag 620

                                                                       
Query: 421 tttccacagacaagcagctgttaaagaaacataatttaccttacttcattatttccctag 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttccacagacaagcagctgttacagaaacataatttaccttacttcattatttccctag 680

                                                                       
Query: 481 tttagtgaacaggaattgatccacagttaaaattctaactgtattcattttggggtataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttagtgaacaggaattgatccacagttaaaattctaactgtattcattttggggtataa 740

                    
Query: 541 aattgggag 549
           |||||||||
Sbjct: 741 aattgggag 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)