BAC Information

Click to search

BAC

Clone NameMSMg01-417K12
Chromosome14 (Build37)
Map Location 28,365,003 - 28,365,389
singlet/doubletsinglet
Overlap geneLOC665370
Upstream geneLOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66
Downstream geneErc2, LOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417K12.T7 (MSMg01no417_k12.b1)MSMg01-417K12.TJ (MSMg01no417_k12.g1)
ACCAG513185AG513186
length744763
length of high quality
(start - end)
386 (71 - 456)238 (77 - 314)
definitionCHROMAT_FILE: MSMg01no417_k12.b1 PHD_FILE: MSMg01no417_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:36 2005CHROMAT_FILE: MSMg01no417_k12.g1 PHD_FILE: MSMg01no417_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCGTGTTTCCTCTCTTCAAATCATTCCACAAAATAGAAATAGA
GAAGATTGCCCAATTCACTTTATGAGGCTCCGGCGGAGCCAGCCGGAGCC
AGACGCCGCGGAGCTGACCCAGGAGTAAGGCCACAGTGAGGCTGAGATCT
GTCGCTTTATCCAGAAGCTCAAAGGACCGGGTGGTTCAAGAGGCCATTCA
GAAGATGCAGCCAGGTGGCAGAGAGGGGCCAAGACATCAAGAAATACAGC
TCCCAGCCCCGGTAGAGGTATGTTATGGATCTTGCTGAGAAACTAACAGG
CCCACTGGAGGAAGCCCTGACTGCAGCTTTCTCCCAGGTGCTCACCATTG
CTGCAGGAGAACCCCTCAGCCTCCTGCACTCCAGGTCGAGCAAGCCCACC
CAGACCCGCGGAAAGGCACTGGCGTTCTTGAGCAATCTAGATGGGCAGAA
GGATGTTGCGTCTGAAGGTTCTGGGTCTGTCTCTATGACTGCCACTGACT
CCTCTCGTGAGGTTTCTGTCTCTGATCCTAATGCCTCTGGAGCCTCCCCT
GATACCTCCGGTCCTGCCTCCTAGGTTACTGTTCTTGACCCTGATTCCTC
TTTTTAGCCCCTTGTTCGCCTTCTCCCCCTTATTCATGCTTTTCCCCCGC
TTCTTTGCCCATATCTATCCTTACTCTCTCTTTTTTCTTCCCAG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTGCAGTGCAGAGGAAAGT
ACTCATGGCGGGTGGTAGAAGTGACCTGTGTTGTGAAAATGGAGGAGGAA
AAACAGAATTAGGGGGTGGAGAGAGGAGAGTGAGATGAAGAAGGTAAAGA
AGACAAGGAAGAGAAGGAAGGAGAAATTGAGTTTGTAGTTTCTATATTCT
CAGAGTAAACAAGATGCTATTGTGGGTGATTTAAAATTCCCTTATGTTTT
TCTGTATTTTTTTTTTTTTTTTTGATAACACATATATAACACATACAGTC
TGACAGTGTACAACATGAACAGACAGATGAGATAACATTAAGTCAGGGCG
AACAATGGTTAGCCACAGCCAGGATTTGAACCTGGCTCTTCTCTTACCTC
AAAGCCAAAGCTCCTTTCACCGTGGAATCCCATGGCTCTCCTCCCTTGGC
GGATAGTCCCGTGTTCCTTTTACCTGATGTCTTCCCTTCTTTTCACGTTT
TTTGCCCCTTTATGCTTTCTCTCCTCTCCATTTCTTTGTTTCTATCCCCT
TTTTTGTCCCTCCCCTTTTTTCCCCCCGTCCCCCCTTCTCTTTTTTTTCC
TTTTCCTTTTTCTACCTTTTTTCTCTCTTGTCCCTTTTCCCTGCCTTCCT
TTTTTTCTCTTTTCCCCCCCCCTTTTCCTCTTCTTTCCCCCCCTTTTTCC
TCCTTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_k12.b1 MSMg01no417_k12.b1 CHROMAT_FILE:
MSMg01no417_k12.b1 PHD_FILE: MSMg01no417_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:36 2005
         (386 letters)



>mm_chr14_28364743_28365527
          Length = 785

 Score =  669 bits (346), Expect = 0.0
 Identities = 374/388 (96%), Gaps = 10/388 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaaatcattccacaaaatagaaatagagaagattgcccaattcactttatgaggc-- 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 647 cttcaaatcattccacaaaatagaaatagagaagattgcccaattcactttatgaggcta 588

                                                                       
Query: 59  --tc-----cggcggagccagccggagccagacgccgcggagctgacccaggagtaaggc 111
             ||     |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 587 cttcaggctcggcggggccagctggagccagacgccgcggagctgacccaggagtaaggc 528

                                                                       
Query: 112 cacagtgaggctgagatctgtcgctttatccagaagctcaaaggaccgggtggttcaaga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cacagtgaggctgagatctgtcgctttatccagaagctcaaaggaccgggtggttcaaga 468

                                                                       
Query: 172 ggccattcagaagatgcagccaggtggcagagaggggccaagacatcaagaaatacagct 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggccattcagaagatgcagccaggtggcagagaggggccaagacatcaagaaatacagct 408

                                                                       
Query: 232 cccagccccggtagaggtatgttatggatcttgctgagaaactaacaggcccactggagg 291
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 407 cccagccccggtagaggtatg-gatggatcttgctgagaaactaacaggcccactggagg 349

                                                                       
Query: 292 aagccctgactgcagctttctcccaggtgctcaccattgctgcaggagaacccctcagcc 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aagccctgactgcagctttctcccaggtgctcaccattgctgcaggagaacccctcagcc 289

                                       
Query: 352 tcctgcactccaggtcgagcaagcccac 379
           |||||||||||||| |||||||||||||
Sbjct: 288 tcctgcactccaggccgagcaagcccac 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 785
Length adjustment: 9
Effective length of query: 377
Effective length of database: 776
Effective search space:   292552
Effective search space used:   292552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)