BAC Information

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BAC

Clone NameMSMg01-418C03
Chromosome14 (Build37)
Map Location 92,023,279 - 92,198,042
singlet/doubletdoublet
Overlap genenone
Upstream geneEG639558
Downstream geneEG665377, LOC638252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418C03.T7 (MSMg01no418_c03.b1)MSMg01-418C03.TJ (MSMg01no418_c03.g1)
ACCAG513546AG513547
length746826
length of high quality
(start - end)		513 (48 - 560)420 (145 - 564)
definitionCHROMAT_FILE: MSMg01no418_c03.b1 PHD_FILE: MSMg01no418_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:15 2005CHROMAT_FILE: MSMg01no418_c03.g1 PHD_FILE: MSMg01no418_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,197,534 - 92,198,042)(92,023,279 - 92,023,696)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGAATGTCCCCACAACCTCCGGAGGTTGGATGTTTCCATTCT
TTATGCTGGCTCTCAGGGATTTCAGTCCTTTCCCCTGACCCAATACCAGA
TCATGTTCCCTTCTCTGCCCACCAATTCCCTTTCCCTCCCTTTCCCCTTT
GTGAGCAACTGAATATTTTTATAAGTACAATAATTTATGTTAAAAATATA
GATAAGAGATAGCACCTGAGATGACCCCAGATTGGCAAATTCATACCACC
TCTGAGAGGAATCCAGATTCCCAGAGACATCAGTTCCACTAAGAAGAGCA
GGCAAGGTATGGAGAGATAGAAGAGAAAGAGAAGCAGAGGGATGTATACA
CAATGAAGTGTAGAAGAGCTGGAAAATCATCTATGAGGATGAATAGCCTC
TTATAAGTTGACACCACCCAATACAATGCTGCGGTCCTAGCATGTGCTAT
CACAAACAGACCTATCTGAATCAGTGTCCATGCTATTTATATGCTGTAAA
TTGACATGGGCAAGAGTCAGATGCCCTCCACCTCTTCTTTTATCCTGAGG
CAGGCCTAGAGGTGACCTTGGTGCCATGAGAGGAAGACAGCTGGCTTCCT
CTGTCACTATCAGTATCTCTAGGGAGAGCTGGACCTGCAGCTTGCATGCA
TCACATTGCTTAAATATTCCTATTGGTTCTCATTTGCACATTTATG

GAGGGTTAGAGGAGGGAGGTGAGCAAGGGAGGAGAGAGAGAGGAGGGAGG
NNNNNGGGGTGGGTTAATGTCTATGATATXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATTA
CTCAGGAAAAAACAGAGAAAACATCCTTTAAATATGTCACTGATCAATGT
TCTTTATCCAAGAGCTTTGGTAGAAGTACCAGTGATATTTATGTGACTTC
TAGGTTTCTTAAAAAAAGATACATTGGTAGCTCATGGACACTAAGGGTTA
CTTCAGCATGCTAATAACGTTAACTAAGGTATTCCTATTTTTAGCTTCCT
TCCAATATGATGTATTGTATTAGGGAGGATTGGCAAACTTATTGAGAAAG
AATCTGGAAAACCTTTACCATACTAAATATTACAAAGACACTTATGACCA
TTCAGTAGATCTAAATATATCCAAATTACTCTAGATGGCTAATGTTGAAG
ATTTCAGTACATCAAAGACAGAGTTAAAAGTCAATTAGATAAAAGTAGGA
AGAACCACGGAAAACAATATCTGAAGATTCAATTGAAATGAACCCATAAA
ATAGTTGATAAGGTAATGCCAGGAACCCGAGAAGGAATGGCCTTCAACTT
CTGAAAAAAAAATTTGGGATAAAAACACCGGGGAAACCGCCCCCTCAACT
TCTTTAAAGGGATCTTTTTTGTGGAATAATACATCCTCCCCCAATACAAC
TTTTTTTTTTTCGCGTGTTCGTTCAAAAAAATTTGTTTCCTTTCTTTATA
AACAAACCATTTTTTCCCGTAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_c03.b1 MSMg01no418_c03.b1 CHROMAT_FILE:
MSMg01no418_c03.b1 PHD_FILE: MSMg01no418_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:15 2005
         (513 letters)



>mm_chr14_92197416_92198328
          Length = 913

 Score =  922 bits (477), Expect = 0.0
 Identities = 501/509 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggaatgtccccacaacctccggaggttggatgtttccattctttatgctggct 64
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 627 gaattctggaaggtccccacaacctccggaggttgaatgtttccattctttatgctggct 568

                                                                       
Query: 65  ctcagggatttcagtcctttcccctgacccaataccagatcatgttcccttctctgccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctcagggatttcagtcctttcccctgacccaataccagatcatgttcccttctctgccca 508

                                                                       
Query: 125 ccaattccctttccctccctttcccctttgtgagcaactgaatatttttataagtacaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccaattccctttccctccctttcccctttgtgagcaactgaatatttttataagtacaat 448

                                                                       
Query: 185 aatttatgttaaaaatatagataagagatagcacctgagatgaccccagattggcaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatttatgttaaaaatatagataagagatagcacctgagatgaccccagattggcaaatt 388

                                                                       
Query: 245 cataccacctctgagaggaatccagattcccagagacatcagttccactaagaagagcag 304
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 387 cataccacctctgagaggaatccagacacccagagacatcagttccactaagaagagcag 328

                                                                       
Query: 305 gcaaggtatggagagatagaagagaaagagaagcagagggatgtatacacaatgaagtgt 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 327 gcaaggtatggagagatagaagagaaagagaagcagaaggatgtatacacaatgaagtgt 268

                                                                       
Query: 365 agaagagctggaaaatcatctatgaggatgaatagcctcttataagttgacaccacccaa 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 267 agaagagctggaaaatcatctatgaggatgaatagcctcttatgagttgacactacccaa 208

                                                                       
Query: 425 tacaatgctgcggtcctagcatgtgctatcacaaacagacctatctgaatcagtgtccat 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tacaatgctgtggtcctagcatgtgctatcacaaacagacctatctgaatcagtgtccat 148

                                        
Query: 485 gctatttatatgctgtaaattgacatggg 513
           |||||||||||||||||||||||||||||
Sbjct: 147 gctatttatatgctgtaaattgacatggg 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_c03.g1 MSMg01no418_c03.g1 CHROMAT_FILE:
MSMg01no418_c03.g1 PHD_FILE: MSMg01no418_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:15 2005
         (420 letters)



>mm_chr14_92023077_92023896
          Length = 820

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   attactcaggaaaaaacagagaaaacatcctttaaatatgtcactgatcaatgttcttta 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attactcaggaaaaaacagagaaaacatcctttaaatatgtcactgatcaatgttcttta 262

                                                                       
Query: 63  tccaagagctttggtagaagtaccagtgatatttatgtgacttctaggtttcttaaaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccaagagctttggtagaagtaccagtgatatttatgtgacttctaggtttcttaaaaaa 322

                                                                       
Query: 123 agatacattggtagctcatggacactaagggttacttcagcatgctaataacgttaacta 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 agatacattggtagctcatggacactaagggttacttcagcatgctaataacattaacta 382

                                                                       
Query: 183 aggtattcctatttttagcttccttccaatatgatgtattgtattagggaggattggcaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggtattcctatttttagcttccttccaatatgatgtattgtattagggaggattggcaa 442

                                                                       
Query: 243 acttattgagaaagaatctggaaaacctttaccatactaaatattacaaagacacttatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acttattgagaaagaatctggaaaacctttaccatactaaatattacaaagacacttatg 502

                                                                       
Query: 303 accattcagtagatctaaatatatccaaattactctagatggctaatgttgaagatttca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 accattcagtagatctaaatatatccaaattactctagatggctaatgttgaagatttca 562

                                                                     
Query: 363 gtacatcaaagacagagttaaaagtcaattagataaaagtaggaagaaccacggaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtacatcaaagacagagttaaaagtcaattagataaaagtaggaagaaccacggaaaa 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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