BAC Information

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BAC

Clone NameMSMg01-419E07
Chromosome14 (Build37)
Map Location 111,413,843 - 111,414,329
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491
Downstream geneLOC100043494, Slitrk5, LOC100043501
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E07.T7 (MSMg01no419_e07.b1)MSMg01-419E07.TJ (MSMg01no419_e07.g1)
ACCAG514410AG514411
length765751
length of high quality
(start - end)		387 (79 - 465)487 (73 - 559)
definitionCHROMAT_FILE: MSMg01no419_e07.b1 PHD_FILE: MSMg01no419_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:44 2005CHROMAT_FILE: MSMg01no419_e07.g1 PHD_FILE: MSMg01no419_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCAGCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGCGGAATTCTGATTTCCTTAGACAAACAGATGGAACTAGAAAATTTCA
ACTTGAGTGAAGTAACCCAATCACAAAAGAACAAACAGTATGTACTCAAT
GATAGGTGGATGTGGGTCATTAGGCTATGCACAGACAGCCTAGTTTCTAG
TTGAGGCTAGATGTTGAACCCCAGGACCTGGTGGTGATAATTCACCTACA
TGGGACAGAAGGAGTTATTTTATGTCTCCTGGAGCCCTGGCTCCTGTCAA
AGTTAATGACCCCTCTTCTCCCTCAAGAGAAGCATGGCTAGTAGTAATGT
AGGCAATGTCCCAAGCTTCTGACCTTCAGGCTGGACTCCTCCCCAGTTAC
CTAACAAGAGAAAAGATAGCAGCATATTTTAAGAGGGGCTGTTTGGCCCC
TCTCCACTCTCTTGCTCTCTTGCTCTTACTCCCATTACTCTCCTTTTTTC
TCTCCTCTCCTCTCCTTCTCTCCTCCCTTCTTTTCTTNTCTTNTCCTTTT
TTCTCCTCCTCTTTTTCCTTTGGTTTTTTCCCCCTTCCCTTCCCTTCTTT
CCCCCCCCACTNCTTTTCTCCCTCCTCCTCTTTTTCCCTTCTTCCCCCCC
TCCCTTTTTTTTCGGCTCCCTTTCCCCTTTTCCCCCCTTCTTTTTTCCCC
TTTTCCCTTTTTTTTTTTTTCCTTTCCCCCCCCCCTTCTTTCCCCCTTTT
TTTTTTTTTCCCCCC

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCAGAAGAATGCCTGTAGTTAGACATA
AGGACCTCTCTGGACTGCTCAAGCAAGCCTTAAAATCAAGCCATCCAGCT
GTTTCAGGAATGCTTGTAAAATGCCTTACCAAAAATAGTTAATTCTTTAC
CTCTGAGGAGTTAAAACTGCAAAAAGAGCTCCAGACACTTCTGTAAATAT
TTATGAAAATAACAAAGTCATTAAATAACACTAATACTACTTGACTGTTC
CAGTCATTTAGTTAAGATTTGTTACTGTGGAGCAAGCCTAAAACAGAAAT
TTGTATTGAAGAAAATCATCTTCAGAAAAACAAGTATTGTTATTACCATG
GCTTAAAAATAGTTCCTGATGTTTGGCTGTGGATCTCTGAATCTGCCTTT
ATCCACTGCTGCATGAAGCCTCTCAGGAGACAGTTATGATAGGGGTCCTG
TCCACATGCATAGCAGCATATCAATAGTAGTGTTAGAGGTTGGCTCTCTC
ACATGGGATGTTTCTCAAGTTGGGGGAGNCATTGGNTGGCTGTTGACTCA
GTCTCTGGTTTCATCTTTATCCCTGGACACCCTGGAGGCAAGAAAAATTT
TGGGATGAAGAATTTTGTTGGGGGATAGATGTACCCCTTCCTCCCTATTA
CTCCTGGCCTTTAAATTGAGGCTTTTTTTTTTCTTATCTCTCCTTTTTCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e07.g1 MSMg01no419_e07.g1 CHROMAT_FILE:
MSMg01no419_e07.g1 PHD_FILE: MSMg01no419_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:44 2005
         (487 letters)



>mm_chr14_111413643_111414529
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagaagaatgcctgtagttagacataaggacctctctggactgctcaagcaagcctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagaagaatgcctgtagttagacataaggacctctctggactgctcaagcaagcctta 260

                                                                       
Query: 61  aaatcaagccatccagctgtttcaggaatgcttgtaaaatgccttaccaaaaatagttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcaagccatccagctgtttcaggaatgcttgtaaaatgccttaccaaaaatagttaa 320

                                                                       
Query: 121 ttctttacctctgaggagttaaaactgcaaaaagagctccagacacttctgtaaatattt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttcacctctgaggagttaaaactgcaaaaagagctccagacacttctgtaaatattt 380

                                                                       
Query: 181 atgaaaataacaaagtcattaaataacactaatactacttgactgttccagtcatttagt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 atgaaaataacaaagtcattaaataacactaatactacttgattgttccagtcatttagt 440

                                                                       
Query: 241 taagatttgttactgtggagcaagcctaaaacagaaatttgtattgaagaaaatcatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatttgttactgtggagcaagcctaaaacagaaatttgtattgaagaaaatcatctt 500

                                                                       
Query: 301 cagaaaaacaagtattgttattaccatggcttaaaaatagttcctgatgtttggctgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaaaaacaagtattgttattaccatggcttaaaaatagttcctgatgtttggctgtgg 560

                                                                       
Query: 361 atctctgaatctgcctttatccactgctgcatgaagcctctcaggagacagttatgatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctctgaatctgcctttatccactgctgcatgaagcctctcaggagacagttatgatag 620

                                                                       
Query: 421 gggtcctgtccacatgcatagcagcatatcaatagtagtgttagaggttggctctctcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtcctgtccacatgcatagcagcatatcaatagtagtgttagaggttggctctctcac 680

                  
Query: 481 atgggat 487
           |||||||
Sbjct: 681 atgggat 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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