BAC Information

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BAC

Clone NameMSMg01-419E12
Chromosome14 (Build37)
Map Location 72,609,553 - 72,609,768
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043132, LOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E12.T7 (MSMg01no419_e12.b1)MSMg01-419E12.TJ (MSMg01no419_e12.g1)
ACCAG514420AG514421
length772752
length of high quality
(start - end)
216 (101 - 316)244 (69 - 312)
definitionCHROMAT_FILE: MSMg01no419_e12.b1 PHD_FILE: MSMg01no419_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005CHROMAT_FILE: MSMg01no419_e12.g1 PHD_FILE: MSMg01no419_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTTTTTTAATTTGGGGGGGGNAAAGGAANATATTTTCCCAGGAGAC
GCGGAAATCCCGTTTCCTTCCACTGGGATCCCCTTTCCTTCACCTTAAAG
TTGACAATAAGTTGAATTTTTGCAGGTCAGGGACCACCTATATACGTGTG
AGGAAGTAGAAACTCCATTGCTTAAGTGATGAAGCAAGGATTTAAAACTG
GACCTAAATAAGACCAAAGCCAAGTGCTTGCCACAGTCCATGGGTAGAGG
GGTAGAATAGAGAAGTCCACAGCTCTAGTCCAGAGGATCCTGGTGCAGGA
AAGACGTACATATTGAGCTATTTATTGACAGAGAAGAAGGCTGAGGTGAC
AATACAGGAAGTAGCAGCGTCCTTACCACTGAAAGGACTTTTTGTTTCCT
GCAACCTGTACAAACAAATACCACCAGTCTAGGGGCTCAAGATAACAAGT
GTTTAACCCTCCTCTAGCTATGGAGCAGAAATCAAAATGGCGGCAGGCAC
TTTGTTCCCTCTCCGGCTTTGGAGAAACCTTTATTGTCCCGCTTCTGAAG
GGGCGGGAATCCTTTGGGTTAGCCCAAATTCTTTCCTTTTGTTCGGGGGG
TTCTTTTTAATATCTGGCCCCCCCTCCCAGGAGAACCCTAACCCTGGCCT
TTGGTTTCTCTTTCCTTCAGCTAGTCCTTTTTTTTTTTTTCCCCACCCTT
TTCATACTCCTTTCCCTCAATTTCTGCCCCCCTCTCATGTTACCCCCTCT
TCTTCTTTTTTTTTTCACCTAG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTATT
GAGGATTTTTGTTTCTATATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCA
TAAAATGAGTTGGGTAGCGTACTTTCTACTTCTATCTTGTGAAAAAGTTT
GTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGCTATACTATTTATAACT
GCTTCTATTTCTTTAGGGGATATGGGACTGTTTAAAAGGTAACTTGTTCC
TGATTCAATTTTGGGACCTGGTATTTGTTCTGAAATTTGTCCATTTTTTT
TTTTTTTTTTTGTCTTTGTGCAGTAAATCCTCTCTGTAAATGCTTTATAA
CGTTTTTTTGTTCATATTTTTTCTTTTGTTGCTCTTTTTTTTCTTTCACT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e12.b1 MSMg01no419_e12.b1 CHROMAT_FILE:
MSMg01no419_e12.b1 PHD_FILE: MSMg01no419_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
         (216 letters)



>mm_chr14_72609353_72609968
          Length = 616

 Score =  395 bits (204), Expect = e-114
 Identities = 213/216 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacaataagttgaatttttgcaggtcagggaccacctatatacgtgtgaggaagtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttgacaataagttgaatttttgcaggtcagggaccacctatatacgtatgaggaagtaga 260

                                                                       
Query: 61  aactccattgcttaagtgatgaagcaaggatttaaaactggacctaaataagaccaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactccattgcttaagtgatgaagcaaggatttaaaactggacctaaataagaccaaagc 320

                                                                       
Query: 121 caagtgcttgccacagtccatgggtagaggggtagaatagagaagtccacagctctagtc 180
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 321 caagtgcttgccacagtccatgggtagaggggtagagtggagaagtccacagctctagtc 380

                                               
Query: 181 cagaggatcctggtgcaggaaagacgtacatattga 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggatcctggtgcaggaaagacgtacatattga 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)