BAC Information

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BAC

Clone NameMSMg01-419I03
Chromosome14 (Build37)
Map Location 36,899,163 - 37,058,384
singlet/doubletdoublet
Overlap geneLOC665933, 4930474N05Rik
Upstream geneGrid1, 4930596D02Rik, LOC100040277
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419I03.T7 (MSMg01no419_i03.b1)MSMg01-419I03.TJ (MSMg01no419_i03.g1)
ACCAG514593AG514594
length724747
length of high quality
(start - end)
164 (78 - 241)466 (70 - 535)
definitionCHROMAT_FILE: MSMg01no419_i03.b1 PHD_FILE: MSMg01no419_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:04 2005CHROMAT_FILE: MSMg01no419_i03.g1 PHD_FILE: MSMg01no419_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:05 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(36,899,163 - 36,899,323)(37,058,067 - 37,058,384)
sequence
NCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAGTTCCG
CNGGAATCTTCACCTTTCCCAACAAACCCCTTTGNCTCCAAGAGGATGCT
ACCTCACACACTCATCCCTCTCATCTATCCACCATACCATTCTCCCAGCT
ACCCACCCACTAAACAACTTCCTCCCCACACAAACCCTCCTCGTACAAAC
ACCCTCACCCACCTAACCACTCCCCTCTCAACCCCCAGGATCCTTCCTTC
TCTGGTTCATCAAGGCCCCAAAGGAATAATCACAAACTCTCCCACTGAAA
ACAGAACAGGCAGGCCTGTTTATCTTTATACNGAGNGNCACAAAGCAGCC
CATGCATGTTCCTGACTTGTTAGCTTAGTCTCTGGGAGTCTGACAGGCCT
TGGTAACTTGATACTGCTATCTTTTCATGGGGTTACCATCCACTTCAAGA
CCTTCAATCTTCCCCTAACTCCTCCATATGGATCCCACCCTCAGTCCAAC
GCTTCACTGCAAGTACAACACGACATTTGTACACACGCCATGATGTGTTT
ACTGCCGTGCAATGCTTTATTTGCCAGTCCTTGGATTACCATCCCCTTTC
TTTTCCGCCTCCTCCCCCAAACTAATTTCCCCACATGACGCCCTATCTTT
ATTTTATTACCCATTTCCCGTATAACTAAAAAAATGCCCCCACACCTTCT
TTGCCGTTATATTTTTTTCCTCCC
ACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCTTTCCTGTCTCCTACTTTACTCTGTA
TTTCAGAGGGTGACATTTCCCAGGCTTCCTTGCCTGATGGCATTCTTTAG
TAAGTCTTATGTAATAAAAACTTCCTTTAAAAATATACAGCCAGCACGCC
AGCACTGGGTTGGCTTGGGTGCGGTGTCTGTGGACACCTGCAAGGTACCC
ACAGGACCCTGCACAGTATCTTAAGACCTCTGGTGAGTGGAACACAGCTT
CTGCTCCAATCCAATTGCTCGGGACCTGAGACTGCATTAATTAGGGAAGC
AGAAAACCCGGGCTGATCAGGGGCACAAGTCCCTTCCAGTCCATGCCAGC
ACCGGGATACCTTGGGCATGGAGGCTGTGGACACCCGCAAGATACCCACA
GGACCCTCCATGGGATCTTAAGACCTCTGTGAGTGGATCAAAACTTCTGC
CAGGAGGCAGGTTTGAACACCAGATATCTGGGAACCTTCCCTGCAAGAAA
AGAGCTTACCTGCAGAGACTACTCTGCACACTGAAACTCACGATATAGCT
AGTCTCCCCAGGCTGCTGAATGAGGCTAACATAATCCCCTGAGGAACAAG
CTCTTACCCGTAGATACCTATAAAACTATCTCCCGAGAATACCTAATGGC
GAAAGGGCTACTTTTAGAATCTTACCTACTTAAAACAATTTCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_i03.b1 MSMg01no419_i03.b1 CHROMAT_FILE:
MSMg01no419_i03.b1 PHD_FILE: MSMg01no419_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:04 2005
         (164 letters)



>mm_chr14_36898963_36899526
          Length = 564

 Score =  259 bits (134), Expect = 5e-74
 Identities = 154/161 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctttgnctccaagaggatgctacctcacacactcatccctctcatctatccaccatac 60
           ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 201 ccctttgcctccaagaggatgctacctcacacactcatccctcccatctatcgaccatac 260

                                                                       
Query: 61  cattctcccagctacccacccactaaacaacttcctccccacacaaaccctcctcgtaca 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 261 cattctcccagctacccacccactaaccaacttcctccccacacaaaccctcctcgtacc 320

                                                    
Query: 121 aacaccctcacccacctaaccactcccctctcaacccccag 161
           |||||||||||||||||| |||||||||||||| |||||||
Sbjct: 321 aacaccctcacccacctacccactcccctctcaccccccag 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no419_i03.g1 MSMg01no419_i03.g1 CHROMAT_FILE:
MSMg01no419_i03.g1 PHD_FILE: MSMg01no419_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:05 2005
         (466 letters)



>mm_chr14_37058067_37058932
          Length = 866

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctttcctgtctcctactttactctgtatttcagagggtgacatttcccaggcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttcctttcctgtctcctactttactctgtatttcagagggtgacatttcccaggcttcc 259

                                                                       
Query: 61  ttgcctgatggcattctttagtaagtcttatgtaataaaaacttcctttaaaaatataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttgcctgatggcattctttagtaagtcttatgtaataaaaacttcctttaaaaatataca 199

                                                                       
Query: 121 gccagcacgccagcactgggttggcttgggtgcggtgtctgtggacacctgcaaggtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gccagcacgccagcactgggttggcttgggtgcggtgtctgtggacacctgcaaggtacc 139

                                                                       
Query: 181 cacaggaccctgcacagtatcttaagacctctggtgagtggaacacagcttctgctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cacaggaccctgcacagtatcttaagacctctggtgagtggaacacagcttctgctccaa 79

                                                                       
Query: 241 tccaattgctcgggacctgagactgcattaattagggaagcagaaaacccgggctgatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  tccaattgctcgggacctgagactgcattaattagggaagcagaaaacccgggctgatca 19

                             
Query: 301 ggggcacaagtcccttcc 318
           ||||||||||||||||||
Sbjct: 18  ggggcacaagtcccttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)