BAC Information

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BAC

Clone NameMSMg01-419L05
Chromosome14 (Build37)
Map Location 88,364,358 - 88,475,603
singlet/doubletdoublet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419L05.T7 (MSMg01no419_l05.b1)MSMg01-419L05.TJ (MSMg01no419_l05.g1)
ACCAG514740AG514741
length741742
length of high quality
(start - end)		279 (272 - 550)488 (71 - 558)
definitionCHROMAT_FILE: MSMg01no419_l05.b1 PHD_FILE: MSMg01no419_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:19 2005CHROMAT_FILE: MSMg01no419_l05.g1 PHD_FILE: MSMg01no419_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,475,325 - 88,475,603)(88,364,358 - 88,364,845)
sequence
GGCCTCTATATTTGCGGCCGCTATANGATCACTATTTTTCACAAAACCGC
GGAATTCATGAAATTTCTACAAAATGAATGGGACTAGAAAATATTATCCT
GAGTGAGGTAACCCAATCTCAAAATAACACATATGATATACACTCACTGA
TGAGTGGATATTATCCCAGAAGCTCAGAATACCCAAGATACAATTTGCGA
AAGGGCTCTACACTGCCAACATGGCGCAATTGAATTAATCTAACTAACCA
GCTTTGGTGGAAGGATTGGTTGTCTCTGTCTTCCAAGCACTGGGTTTGCC
ATACTCAGACAGAATGTATTTGAGTTTTGACAATCCACACTCAATCCTTT
CAGTTGTGTAGAAAACATGCTACTTACATGAGTATCACCTTTCAAACTCA
AGAAGATATATTTATGTTTAAAAAAAGTCATAAATCAGGATGGGGTGTTC
AAGGTTATATGTGAAAACAGGAAAACAAAATACCTAATTTTCAATTTAGA
TCTCTCGTCCTGCAAAACAACCACTGACACTTATCATATTGTTTTGGAAT
ACTACTATTTCCCTATTGGTCTTACTGAGATTGATTTCATTACCTAACCA
AGGTAAATAAACTTTGGGTCTCACATTCCCAAAAGGCGGGATTTCTAGAA
ATCTAATTTTCTCGCAAACTTAAGGACAGGAAGCAAGATGGAACTACAAC
TCCTTTGGGGAAAGCCGCCCGTATACAAATATAACTCTCCC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTTAATACAGACTTTCAAGCAGCTACCA
CCTAATGCTCTCTGGTGTGAAACAGTGAGACATCATTTTGGTTATCCAAG
GAGAAACGAATGGTATGACCTTTAGTGATGAGTTATACATCTTACTATTT
GTAGTCCTGTAAGTCATATTGTGAACAACCGAGCCGTGAATCCCGTCTCC
CTGTGGGCTCTGGGTTGTGTGACTATAAGGAGATATTTTTACATCACCTG
CAATCCCGGGAGTGGTATGTCTGCTTCTATGACCGCTAAGGGAATTTCAA
TGATGTTTCAACCTACAAAAATTCTTTTGATAGTGATCTCTGTGAGTTTG
TTAAGTAAGACTGACAGGTATAACTTCTAAAATGTACTTAAATCATGATT
CTCCTGAAGATAAACTACTCATGGATTTAATTAAAACAGGATAAGGTGAC
AGGAGGTTTTCCTCTGTTATGGAGACCATATAAATAGATCTCTGAGGGAT
ATACTTTGTTTTCTTGCATATTTAATCCTTGAAAAATGTCAACTATTTTT
ACCAATTTGGGTACTTCCATAAAAATAATTAATTAACTACACTAATGTTT
AAAGATGTCCCTTGGGAGCCATATAGTTTCCTCCAAGAGCTGTCTACTGT
GGGAAACTGTTCCGGTGGACAACCTATGAAAACCCTAATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_l05.b1 MSMg01no419_l05.b1 CHROMAT_FILE:
MSMg01no419_l05.b1 PHD_FILE: MSMg01no419_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:19 2005
         (279 letters)



>mm_chr14_88475125_88475803
          Length = 679

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctctgtcttccaagcactgggtttgccatactcagacagaatgtatttgagttttgac 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||
Sbjct: 479 gtctctgtcttccaagcactgggtttgccatactcagacagaatgtaagtgaggtttgac 420

                                                                       
Query: 61  aatccacactcaatcctttcagttgtgtagaaaacatgctacttacatgagtatcacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatccacactcaatcctttcagttgtgtagaaaacatgctacttacatgagtatcacctt 360

                                                                       
Query: 121 tcaaactcaagaagatatatttatgtttaaaaaaagtcataaatcaggatggggtgttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcaaactcaagaagatatatttatgtttaaaaaaagtcataaatcaggatggggtgttca 300

                                                                       
Query: 181 aggttatatgtgaaaacaggaaaacaaaatacctaattttcaatttagatctctcgtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggttatatgtgaaaacaggaaaacaaaatacctaattttcaatttagatctctcgtcct 240

                                                  
Query: 241 gcaaaacaaccactgacacttatcatattgttttggaat 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcaaaacaaccactgacacttatcatattgttttggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no419_l05.g1 MSMg01no419_l05.g1 CHROMAT_FILE:
MSMg01no419_l05.g1 PHD_FILE: MSMg01no419_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:19 2005
         (488 letters)



>mm_chr14_88364158_88365045
          Length = 888

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttaatacagactttcaagcagctaccacctaatgctctctggtgtgaaacagtgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttaatacagactttcaagcagctaccacctaatgctctctggtgtgaaacagtgaga 260

                                                                       
Query: 61  catcattttggttatccaaggagaaacgaatggtatgacctttagtgatgagttatacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcattttggttatccaaggagaaacgaatggtatgacctttagtgatgagttatacat 320

                                                                       
Query: 121 cttactatttgtagtcctgtaagtcatattgtgaacaaccgagccgtgaatcccgtctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttactatttgtagtcctgtaagtcatattgtgaacaaccgagccgtgaatcccgtctcc 380

                                                                       
Query: 181 ctgtgggctctgggttgtgtgactataaggagatatttttacatcacctgcaatcccggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgggctctgggttgtgtgactataaggagatatttttacatcacctgcaatcccggg 440

                                                                       
Query: 241 agtggtatgtctgcttctatgaccgctaagggaatttcaatgatgtttcaacctacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggtatgtctgcttctatgaccgctaagggaatttcaatgatgtttcaacctacaaaa 500

                                                                       
Query: 301 attcttttgatagtgatctctgtgagtttgttaagtaagactgacaggtataacttctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcttttgatagtgatctctgtgagtttgttaagtaagactgacaggtataacttctaa 560

                                                                       
Query: 361 aatgtacttaaatcatgattctcctgaagataaactactcatggatttaattaaaacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtacttaaatcatgattctcctgaagataaactactcatggatttaattaaaacagg 620

                                                                       
Query: 421 ataaggtgacaggaggttttcctctgttatggagaccatataaatagatctctgagggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaggtgacaggaggttttcctctgttatggagaccatataaatagatctctgagggat 680

                   
Query: 481 atactttg 488
           ||||||||
Sbjct: 681 atactttg 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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