BAC Information

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BAC

Clone NameMSMg01-420H04
Chromosome14 (Build37)
Map Location 17,702,875 - 17,703,103
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H04.T7 (MSMg01no420_h04.b1)MSMg01-420H04.TJ (MSMg01no420_h04.g1)
ACCAG515311AG515312
length722632
length of high quality
(start - end)
233 (404 - 636)393 (97 - 489)
definitionCHROMAT_FILE: MSMg01no420_h04.b1 PHD_FILE: MSMg01no420_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:18 2005CHROMAT_FILE: MSMg01no420_h04.g1 PHD_FILE: MSMg01no420_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCAGAGGATC
CGCGGAATTATATATATTCCCTTTCTCGGGGCTAGAATTATAGCCCAATG
GGAGAGTGCTCACTTATCATGTCTAAGGCTTTAGGTTTAATCTTCACTAT
AAATTGATGGATAGATAGAGCATGATATTGGGGCTGAAACTATATAGGGC
TTGCCTAGCTTGTGCGAATCCCTGAGCTATATCCTCTCTACCCCCCAAGT
ATATATAATATAATTTTGTGTACAATAGATATTTTTACTCTCCATTTATG
GCAACATAAAAGTCCCCTGTTCTTTTATTGGACCATCCCTATACCAGTTA
TGGATGGGAATGGTTCCCCGAAACCCCAACTCCGGACCCCTAAATTTACA
TGGAATATGTGAGGCAGATAGTAATCTAAATTCTGCTAAGGGGAGTATTA
TCTCAGAGGATACTAGATGGCATGACATTACCTAATTACATATGGAAGGG
AAACCGGAGAAGAGAACAGATGTTCAGAGCCATGGAGGAGATGGAGAGAA
GGTTCAATGTGTAAAATCACTTTCTTCATAAGCTCAGTCCCTGGGGCTCA
AAATGGAAGAAGGGAACTAATGCCCAAGGGCTGTCCTCACATCTGCCCAA
TTTGCCATGTCACGTGCATGCCCACTCTCATACACAAACACACACATGCA
CAGCTTAATAATAATGATGATG
CCCCTTTTCCTCCCTATTCCTCGATGATAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCT
GTGTCCATGAACATGGACATTCTGACCTGGAGTGAGCACACTGCTGTTTC
CCTACACATGTGCATGCTGAAATTGAGAGAGCACACTGCTGTGTCCTTAC
ACATGTGCATGCTGATCTGGAGTGAGCACACTGCTGTGTCCCTTCACATG
TGCATGTAGAACTGGACTGAGAAAACTGCTGTGTCCTTACACATGTGCAT
GCTGACCTGAAATGAGCACACTGCTGTGTCCTTACATATCTGCATGCTGA
CCTGGAGTGAGCCCACTGCTGTGTCCTTACACATGTGCACGCTAACCTGG
AGTGAGCACAGTACTGTGTCCTTACACATAGGCATGCTGACCTGTAGTGA
GCATACTGTTCTGACCTTACACATCTGCATGCTGACCTGTAGTAAGCACA
CTGCTGCGTCCTTGCACATGTGCATGCTGGGCCTGCACTGAGTAAACTGC
TGTGTCCTTACACATGTGCCTCCTGACCTGTAGTGAGCACACTGCTATAT
CCCTTAATTATGTAGACGTTGAACCTGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h04.b1 MSMg01no420_h04.b1 CHROMAT_FILE:
MSMg01no420_h04.b1 PHD_FILE: MSMg01no420_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:18 2005
         (233 letters)



>mm_chr14_17702671_17703303
          Length = 633

 Score =  398 bits (206), Expect = e-115
 Identities = 224/230 (97%), Gaps = 2/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgtgaggcagatagta-atctaaattctgctaaggggagtattatctcagaggatactag 63
           |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtgaggcggatagtaga-ctaaattctgctaaggggagtattatctcagaggatactag 375

                                                                       
Query: 64  atggcatgacattacctaattacatatggaagggaaaccggagaagagaacagatgttca 123
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 374 atggcacgacattacctaattacatatggaagggaaaccggagaagagaacagaagttca 315

                                                                       
Query: 124 gagccatggaggagatggagagaaggttcaatgtgtaaaatcactttcttcataagctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagccatggaggagatggagagaaggttcaatgtgtaaaatcactttcttcataagctca 255

                                                             
Query: 184 gtccctggggctcaaaatggaagaagggaactaatgcccaagggctgtcc 233
           ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 254 gtccctggggctcaaaatggaagaaggaaactaatgcccaagggctgtcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)