BAC Information

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BAC

Clone NameMSMg01-420H11
Chromosome14 (Build37)
Map Location 80,286,972 - 80,287,292
singlet/doubletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneEG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H11.T7 (MSMg01no420_h11.b1)MSMg01-420H11.TJ (MSMg01no420_h11.g1)
ACCAG515325AG515326
length768791
length of high quality
(start - end)
64 (251 - 314)324 (67 - 390)
definitionCHROMAT_FILE: MSMg01no420_h11.b1 PHD_FILE: MSMg01no420_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:19 2005CHROMAT_FILE: MSMg01no420_h11.g1 PHD_FILE: MSMg01no420_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTACCAAAATTGCGGGGGGATANGAGACCCAAATCACAGAAACGCGNG
AANNNCGGCGTTCACACAAAACGGGAANNNAGGAGACCCACTTGGAAAAA
GAGAATCTCTGTGTTCCCCAAAAAAACCATAGGCCCCAAGACCGGTGGGG
GGAGAGAAAACGGTCTGAGATCCAAACCAGGTAATTGGCCAAAGGCAAAC
CCCAGGGGGAAAACTAACAAGGCCTGGAAGGGTGCGGGTTTCCCTTCTGA
GTTTGAGTCAGTGGGATGTCTCCTGCCATCCCTAGTCTAGGGTCAAGTTA
TGTCGGAGGAACATAATCAAGTTTGGCGATGGAATTAAGCTGGAGGATAG
AATGAACGGACACATCTTTCTTTACATTTTGTGAAATGTATGACATCGAA
ATGCCTACTTAAGTTTGAAATGACAAACTTCAAAGCCAAAGCTTTAAGAA
TTGGGATGGAGAGATGGCTCTGTGGATAAAGTGCTTGCCCTACACCATAA
GCTACTGAGAATCTACTAAAAGGCCGACTCTTTCTAACACATACCCCGCC
CCTCCCCACCACCATCATAATTTTAAAAAAATTTCAATAGGGACTAAATT
ACGTTGGGCAAAAAAACCCCCCCACACGGGAAAAAAATTGCTTCGGATTG
TTTTGTGGGACCCAAATTTTCACCTTCTTGCCCTACAGGGGAAAAAAAAC
AACAAAACCCCCACACGGCCCCCCCAAAAGAGCTTACCCACCCCTCCCAC
TGGCAACCCACTGGTTAN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTGGCAGCTTGTATAGCACTTTTCAGTTCTAT
GAAAGCTAGTCATTGAGGAGGAGGTTTTCAGGTCGAATCCAGTTTGAATC
CTGAGTTCTATGTCCACAGTGCACGGTGTCTTCAGCTATGGGCACTTGCC
TTCAGCTTCTCAGGGGCAGCCAAGGACAACAGCAATAGCTAATTGTTTTG
GGAGTGAAACACTGGCTAAAGGTTTCTTGACCTTCAGGCTGTAAGGGTTT
GAAAGAGAAACAGGATGTAATGAAGCTACTGCTCTGAATAATGATGCTCA
TGGTATGTGNGGGAGGGAGATGTTGNTTCNNTTTCTCCNTTTTNTNNTTT
TATTTACCCACTCCCTCTGCCTTGTCTTTTTGTCTCGTTGTCTCTGTCTG
CTGCGTGTCTATGTCTTTTTTTTCTCTTCTGCGCTTTTGCCCTTTGGGTC
GCTGCTTTTTTTTTTCCCCCTTCTTTGGCCTCTTTTCTCCTTTCCCTTCT
TCTCTTGTTCCTCCTTTTCTTTTCTTCCCCTTTTGTTTCCCTCTCTTCTT
CTTTTTTTGCTTCTTCCCCTGTTCTCTCGCTTTTTTTTTTTTTTCCCCGC
CTTTTTTTTTTCGTTTTTCTCTTCCCCTTTTCCTTTTCCCCTTTTCCTTT
TTCTCCTTCTTTGTTTTCCCTCTCTCCCTTTTCCTCTCTCCTTNTTTTTT
CCGCTCCTCTCTGCTTCTCTCTTCTTTTTGTCTTCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h11.g1 MSMg01no420_h11.g1 CHROMAT_FILE:
MSMg01no420_h11.g1 PHD_FILE: MSMg01no420_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:19 2005
         (324 letters)



>mm_chr14_80286772_80287494
          Length = 723

 Score =  582 bits (301), Expect = e-171
 Identities = 316/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttggcagcttgtatagcacttttcagttctatgaaagctagtcattgaggaggaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttggcagcttgtatagcacttttcagttctatgaaagctagtcattgaggaggaggtt 260

                                                                       
Query: 61  ttcaggtcgaatccagtttgaatcctgagttctatgtccacagtgcacggtgtcttcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaggtcgaatccagtttgaatcctgagttctatgtccacagtgcacggtgtcttcagc 320

                                                                       
Query: 121 tatgggcacttgccttcagcttctcaggggcagccaaggacaacagcaatagctaattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgggcacttgccttcagcttctcaggggcagccaaggacaacagcaatagctaattgt 380

                                                                       
Query: 181 tttgggagtgaaacactggctaaaggtttcttgaccttcaggctgtaagggtttgaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgggagtgaaacactggctaaaggtttcttgaccttcaggctgtaagggtttgaaaga 440

                                                                       
Query: 241 gaaacaggatgtaatgaagctactgctctgaataatgatgctcatggtatgtgngggagg 300
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gaaacaggagggaatgaagctactgctctgaataatgatgctcatggtatgtg-gggagg 499

                                 
Query: 301 gagatgttgnttcnntttctcc 322
           ||||||||| |||  |||||||
Sbjct: 500 gagatgttgtttcaatttctcc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)