BAC Information

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BAC

Clone NameMSMg01-421H04
Chromosome14 (Build37)
Map Location 84,797,656 - 84,932,462
singlet/doubletdoublet
Overlap genePcdh17, 9630013A20Rik
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421H04.T7 (MSMg01no421_h04.b1)MSMg01-421H04.TJ (MSMg01no421_h04.g1)
ACCAG516073AG516074
length780781
length of high quality
(start - end)		551 (45 - 595)439 (72 - 510)
definitionCHROMAT_FILE: MSMg01no421_h04.b1 PHD_FILE: MSMg01no421_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:37 2005CHROMAT_FILE: MSMg01no421_h04.g1 PHD_FILE: MSMg01no421_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:37 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(84,797,656 - 84,798,202)(84,932,024 - 84,932,462)
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAAATAACTAACCCTAGCTTGTCATCATTTAAACTTCTGCCCCT
TCGCACAATCCTTCTACTAGAGATATCTTTTTAAAAATATATTGATTAAA
AGCTGGCTACAGAAATAAAATGTGAATTTTGCAACTTGAATATTTGAATT
AAATTTAAAAAATGAAAAGTCATTTAGATCTTGTGCCCCAAATAACTTAC
TAGGTAGCCAAACACAGACAATTTTCTACTAACTCTTTCCTAAGCATGCT
TTTTGTTTCTCCATTTTAATCTCTTATTCTTTGGAGAAAGGGGACAACAA
GGAAAAGTAGGCGAGGAAAACCTGACAATCAAGAGGCTTCTCATTTATAA
AGAAAGCAATTTCAAATGAATGAAAGTATGCAAGAATGAAATGGCCTACA
GGTTTGGTTCTTTCCAAACCCTTCATAGTGAATATGTAAAAACAATGTAC
TTGTAGTGAATATGTAATTGAAAGAATATACATATTAAATATTTTCATGG
AACTACTACCTCTGAATGCATGAAAAAAGTCATTAATTAAACTTAGAAAG
TATTATATGAATATTTAAAGATACAGGAATCTAACATATCTCCTGATTTA
TATAAAGTCCATGATTTTAAATAAAGTCGACAATTGTGCTTGTGCAAAGG
AATGTGAAACGATTTTGGGTTGGTTATATTACCTACTATATTGAAATACC
TCCGAACAAATACATAATTCTTTTAACCCN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATAGCCTGGGAAGAAGTAAAATGTGGT
CATGGGAGAGAGATTCTCTGTGGAATACACCACCACTGTAACCAGATCCC
CTGGGGAATTTAGTCTTTGTTCTATGTAACCCGTGCTGGAGAGAGAGAGC
TTCAAAAAGGATGGTCAGGATTCATTTTGTTAAATCAAATAAGAGGCTAA
AGAGTGGATCACAGATTTTCATAATAAGTTCTAAGATACTTTAAAAATAT
TTCATCCTTATATTTGCAATTGTTACTTTGGTGACAGTCATGAAATAAAA
GGGTTCCTTTCATAGCTGACTTTTACCCTACTGAGAGCGGCAAATGGAAT
TTCCTATCACAATGTATTATGAATAAGCTTGTCAAAAGGGCACTTTCCTG
TTGTATTATATATGCGTGTGGATCTTGTAATCAATTCCCTTCACTTTCAG
TTTTTGTTTTTGGTGTAAGTGGGCGAAAAAGGCTTACTCAACAGGTATAG
TTCAGAATAATGACACTTCATGATTTCCCTGCTCAAAACAAAAATGTCTG
CTGTGAGGACTTGTACGTCATTTTTTTGACAATAAACATGGTGACCCTCT
ATTATAAGCATTATTTTATGGTTCTTATTTTAAAGAAGGCGATTGCGTAT
TCTGTACCAACAAGGCTTTCTTTGTGTCCGTTCATATTTATTCCCATCCT
GTGTCTTTATATTTTATCCCCTTTTTGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_h04.b1 MSMg01no421_h04.b1 CHROMAT_FILE:
MSMg01no421_h04.b1 PHD_FILE: MSMg01no421_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:37 2005
         (551 letters)



>mm_chr14_84797452_84798402
          Length = 951

 Score = 1011 bits (523), Expect = 0.0
 Identities = 541/547 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaaataactaaccctagcttgtcatcatttaaacttctgccccttcgcacaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaaataacaaaccctagcttgtcatcatttaaacttctgccccttcgcacaa 264

                                                                       
Query: 65  tccttctactagagatatctttttaaaaatatattgattaaaagctggctacagaaataa 124
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tccttctactagagatgtctttttaagaatatattgattaaaagctggctacagaaataa 324

                                                                       
Query: 125 aatgtgaattttgcaacttgaatatttgaattaaatttaaaaaatgaaaagtcatttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtgaattttgcaacttgaatatttgaattaaatttaaaaaatgaaaagtcatttaga 384

                                                                       
Query: 185 tcttgtgccccaaataacttactaggtagccaaacacagacaattttctactaactcttt 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 tcttgtgccccaaataacttactaggtagccaaacacagaaaattttctactaactcttt 444

                                                                       
Query: 245 cctaagcatgctttttgtttctccattttaatctcttattctttggagaaaggggacaac 304
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 445 cctaagcatgctttttgtttctccattttaatctcttaggctttggagaaaggggacaac 504

                                                                       
Query: 305 aaggaaaagtaggcgaggaaaacctgacaatcaagaggcttctcatttataaagaaagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggaaaagtaggcgaggaaaacctgacaatcaagaggcttctcatttataaagaaagca 564

                                                                       
Query: 365 atttcaaatgaatgaaagtatgcaagaatgaaatggcctacaggtttggttctttccaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttcaaatgaatgaaagtatgcaagaatgaaatggcctacaggtttggttctttccaaa 624

                                                                       
Query: 425 cccttcatagtgaatatgtaaaaacaatgtacttgtagtgaatatgtaattgaaagaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccttcatagtgaatatgtaaaaacaatgtacttgtagtgaatatgtaattgaaagaata 684

                                                                       
Query: 485 tacatattaaatattttcatggaactactacctctgaatgcatgaaaaaagtcattaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacatattaaatattttcatggaactactacctctgaatgcatgaaaaaagtcattaatt 744

                  
Query: 545 aaactta 551
           |||||||
Sbjct: 745 aaactta 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_h04.g1 MSMg01no421_h04.g1 CHROMAT_FILE:
MSMg01no421_h04.g1 PHD_FILE: MSMg01no421_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:37 2005
         (439 letters)



>mm_chr14_84931824_84932662
          Length = 839

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatagcctgggaagaagtaaaatgtggtcatgggagagagattctctgtggaatacacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ccatagcctgggaagaagtaaaatgtggtcatgggagagagattctctgtggaatacacc 580

                                                                       
Query: 61  accactgtaaccagatcccctggggaatttagtctttgttctatgtaacccgtgctggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 accactgtaaccagatcccctggggaatttagtctttgttctatgtaacccgtgctggag 520

                                                                       
Query: 121 agagagagcttcaaaaaggatggtcaggattcattttgttaaatcaaataagaggctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 519 agagagagcttcaaaaaggatggtcaggattcattttgttaaatcaaataagagggtaaa 460

                                                                       
Query: 181 gagtggatcacagattttcataataagttctaagatactttaaaaatatttcatccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gagtggatcacagattttcataataagttctaagatactttaaaaatatttcatccttat 400

                                                                       
Query: 241 atttgcaattgttactttggtgacagtcatgaaataaaagggttcctttcatagctgact 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atttgcaattgttacattggtgacagtcatgaaataaaagggttcctttcatagctgact 340

                                                                       
Query: 301 tttaccctactgagagcggcaaatggaatttcctatcacaatgtattatgaataagcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttaccctactgagagcggcaaatggaatttcctatcacaatgtattatgaataagcttg 280

                                                                       
Query: 361 tcaaaagggcactttcctgttgtattatatatgcgtgtggatcttgtaatcaattccctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcaaaagggcactttcctgttgtattatatatgcgtgtggatcttgtaatcaattccctt 220

                              
Query: 421 cactttcagtttttgtttt 439
           |||||||||||||||||||
Sbjct: 219 cactttcagtttttgtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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