BAC Information

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BAC

Clone NameMSMg01-421L08
Chromosome14 (Build37)
Map Location 68,924,653 - 69,126,665
singlet/doubletdoublet
Overlap geneAdam7
Upstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421L08.T7 (MSMg01no421_l08.b1)MSMg01-421L08.TJ (MSMg01no421_l08.g1)
ACCAG516271AG516272
length754770
length of high quality
(start - end)		440 (76 - 515)361 (81 - 441)
definitionCHROMAT_FILE: MSMg01no421_l08.b1 PHD_FILE: MSMg01no421_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:59 2005CHROMAT_FILE: MSMg01no421_l08.g1 PHD_FILE: MSMg01no421_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,924,653 - 68,925,092)(69,126,325 - 69,126,665)
sequence
TTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATC
CGCGGAATTCTACACACTGTTCCATGAAGCATAAGGTTTCCAGTCTATCT
GGTAATAACATAAAGTATTCCAGATAATCACCTATTTGTGATATCTCTAA
TCTTCAAATGGTTCTTTGTTCTGGCCTTGGCAATATCACCCATACACGTA
CTTGAAAGATCAATCCCTAGCATTCCCTCTCCATAGATCTCTGTGTCTCC
CAGCATGGCGTCTCTTTTTTTGAAGTAGGATCTGAGTTATCTGGTTGTTT
ACTCTCCTCAGATTAAATTCTCTGTCCTGTATTCAGAGTGTCTGGGGGTT
CTGCGGACTTCTGCTGAATCCTTAGTCTCTGCACGGCCAGGGGATTTGAA
CTCGTTCTGGTTAACTTGTAACAGCAAATGTGAGCTTTACACGTCCACAA
GAAAAAGCAGTTTGCAGACAAAAAGAACCCTGATCCTAAGGAAACGGAAA
GCCAACCGGAGCCTATGGCTGCAGCATGGCTCCACTCTGCCAGAGCACGC
TGGGGGGAATCCTTTCTGCTCCTCTGTGACCCTCCCTGCGGTGCCTTCTG
TTTACAGAATTTTCTTCAGCTTTGTTTCCCAAGGATGCTTATAAGCGTAC
TGCCTCTTTAGCTTTCCATTATCCCAATAAATTTTTTCTTCACCTCATTA
TTGGTATAAAAAACTTAAAGATTGAATCCTTCGGGCCTCAAGAATAATAC
TACT

AAAATCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTCTCTGTGCCTGTCTT
AGCTTATACTGCTTCCCACACTTACTTAAGATGCCACAAATGCACAAACA
TCAGGGTTAGATCCATTTTTCATCTAAAGTGTACTCCATTGTATGTTTGT
CACACTTTTCCATCCATCCATCCACCTATTGATGGATATCTAGGTTGAGT
CAGTGTCTTTATTAGTAGGAATAACTCTTCAACAAACATGAGAGTACAGA
AACATCTGTTTTGGAAGGAAATTCCTATGTACTCACAATTGAGGGCTCCT
TGGCTCCCATTTGCTCAGTTAGAGTACAGTGCTAACAGAAAAAGATGAGG
CCCAAGATGTGGGAAGCTAGGAATGGCGGAAGAATGGAGAATAAGAGGAG
AGGAGTAATGACTTTTTTGTGCCCCTTTACTTTTTTCCCTCCTTTTCTCT
TCTTATTCTAATCCATCATTTCTCCTTTTTCTCTTTTATTTCCTCTCACT
TCCCGCTCACGCTTTTATCTTCTATATTTTTTTTTACTTTATAAACCTCA
CTTTAATATCTCCTCCACATCAATTATCATTTTGAACATAAAAATTTCCT
CTCTTTTATTTCTCCCCTCTTCTTTACCCCTTATTCTTCTTTTCTCTCAT
TATTATTATCACACTATCTCTTTATTCTTCTTTCTACTAATTTTTTATCT
ACTTTTCTCTTTTTTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_l08.b1 MSMg01no421_l08.b1 CHROMAT_FILE:
MSMg01no421_l08.b1 PHD_FILE: MSMg01no421_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:59 2005
         (440 letters)



>mm_chr14_68924453_68925292
          Length = 840

 Score =  843 bits (436), Expect = 0.0
 Identities = 439/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcataaggtttccagtctatctggtaataacataaagtattccagataatcacctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcataaggtttccagtctatctggtaataacataaagtattccagataatcacctat 260

                                                                       
Query: 61  ttgtgatatctctaatcttcaaatggttctttgttctggccttggcaatatcacccatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgatatctctaatcttcaaatggttctttgttctggccttggcaatatcacccatac 320

                                                                       
Query: 121 acgtacttgaaagatcaatccctagcattccctctccatagatctctgtgtctcccagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtacttgaaagatcaatccctagcattccctctccatagatctctgtgtctcccagca 380

                                                                       
Query: 181 tggcgtctctttttttgaagtaggatctgagttatctggttgtttactctcctcagatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcgtctctttttttgaagtaggatctgagttatctggttgtttactctcctcagatta 440

                                                                       
Query: 241 aattctctgtcctgtattcagagtgtctgggggttctgcggacttctgctgaatccttag 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattctctgtcctggattcagagtgtctgggggttctgcggacttctgctgaatccttag 500

                                                                       
Query: 301 tctctgcacggccaggggatttgaactcgttctggttaacttgtaacagcaaatgtgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctgcacggccaggggatttgaactcgttctggttaacttgtaacagcaaatgtgagc 560

                                                                       
Query: 361 tttacacgtccacaagaaaaagcagtttgcagacaaaaagaaccctgatcctaaggaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttacacgtccacaagaaaaagcagtttgcagacaaaaagaaccctgatcctaaggaaac 620

                               
Query: 421 ggaaagccaaccggagccta 440
           ||||||||||||||||||||
Sbjct: 621 ggaaagccaaccggagccta 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_l08.g1 MSMg01no421_l08.g1 CHROMAT_FILE:
MSMg01no421_l08.g1 PHD_FILE: MSMg01no421_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:59 2005
         (361 letters)



>mm_chr14_69125905_69126665
          Length = 761

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%)
 Strand = Plus / Minus

                                                                       
Query: 21  agcttatactgcttcccacacttacttaagatgccacaaatgcacaaacatcagggttag 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agcttatactgcttcccacacttacttaagatgccacaaatgcacaaacatcagggttag 702

                                                                       
Query: 81  atccatttttcatctaaagtgtactccattgtatgtttgtcacacttttccatccatcca 140
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 attcatttttcatctaaagtgtactccattgtatgtttgtcacacttttccatccatcca 642

                                                                       
Query: 141 tccacctattgatggatatctaggttgagtcagtgtctttattagtaggaataactcttc 200
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 641 tccacctattgatggatatttaggttgagtcagtatctttattagtaggaataactcttc 582

                                                                       
Query: 201 aacaaacatgagagtacagaaacatctgttttggaaggaaattcctatgtactcacaatt 260
           ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct: 581 aacaaacatgagagtacagaaacatctgtttagtaaggaaattcctatgtacacacaatt 522

                                                                       
Query: 261 gagggctccttggctcccatttgctcagttagagtacagtgctaacagaaaaagatgagg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gagggctccttggctcccatttgctcagttagagtacagtgctaacagaaaaagatgagg 462

                                                    
Query: 321 cccaagatgtgggaagctaggaatggcggaagaatggagaa 361
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 461 cccaagatgtgggaagctaggaatggtggaagaatggagaa 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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