BAC Information

Click to search

BAC

Clone NameMSMg01-422A14
Chromosome14 (Build37)
Map Location 83,740,506 - 83,741,002
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422A14.T7 (MSMg01no422_a14.b1)MSMg01-422A14.TJ (MSMg01no422_a14.g1)
ACCAG516523AG516524
length719716
length of high quality
(start - end)
659 (38 - 696)501 (68 - 568)
definitionCHROMAT_FILE: MSMg01no422_a14.b1 PHD_FILE: MSMg01no422_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:24 2005CHROMAT_FILE: MSMg01no422_a14.g1 PHD_FILE: MSMg01no422_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTATTCTCTGCACCCCATTTTTAATGGGGTTATTTGTTCTTTTTTTTTG
GAGTCCACCTTCTTGAGTTCTTTATATATATTAGATATTAGTCCCCTATA
TGGTTTAGGATAGGTAAGAATACTTTCCCAATCTGTTGGTGGCCTTTTTG
TCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTACGATG
TCCCATTTGTCTATTCTCGATCTTACAGCACAAGCAATTGCTGAAATTCC
TAGTCAAATGGATGATCTCTGGAGGGCATCATCCTGAGTGATGTAACCCA
ATCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAGC
CCAGATACTTAGAATACCCAAGATATAAGATACAATTTGTGAAACTCATG
AAACTAAAGAAGAATGAAAACCAAAGTGTGGACACTTTGCCCCTTCTTAG
AACTGGGAACAAAACACCCATGTAAGGAGTTACAGAGACAAAGTTTGGAG
CTGAGATGAAAGGATGGACCATCTAGTGACTGCCATACCCTGGGATCCAT
CCCACAATCAGCCCCCAAACGCTGACACCATTGCATACACTAGGAAGATT
TTGATGAAAGGACCCTGATATAGCTGTCTCTTATGAGACTATGCCTGGGC
GTGGCAAACACAAAATTGG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCACAAAATCTAAGCATACTTTTGTAGAAAATTATCTGAGGTTGC
TTATATACTTTTCCCGCTCTTCTGGACTTGAGTTTTTAAAAAGTATGATA
TAGTGAGTTGTTCTCTGACAGTTACTTCTATCTGGACTTTTAAAAAGCTG
AAGATTTGCTTTGGAGAACTAAAGATCTTTCTCTTTATAATGACCACTAA
CTTTTTCTCCCCTTTCTTTTAATCATTGATAATTGTGAATCATTTGAATC
AATTTCAAATGGCTTTTTATTTTTTTCTTTAAATGAATAAAATCAAATAT
ATTTTATATATACAGTCTTTCTGTATGTCTGTATTCTGTATTGACTTAAT
ACTTGTGACAGATTACTTTTTTTCTGAGGAGAGACTTATAATTAGTCAAC
ATTTAATCCATAAACTTTAAAATAAGTTATCCAGTTGATGGAATACTTTT
TTAATATAGAAGAGACAGACTCCAATATATTCCACTAATGTATAGTGGTC
AACATGGCCACTGTTGGAATCCTGTGTAGAATACATATATAAACAATTTA
GTTTGCTCATTAAAAGCCTTTCAAATAATTCCCACTGGAACCACAATATT
TCAAACTCTTATAAAAGTTTAAATGGTCCTTGAAAGAATATCCTTAACCT
TCCCCAGAGTTGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_a14.g1 MSMg01no422_a14.g1 CHROMAT_FILE:
MSMg01no422_a14.g1 PHD_FILE: MSMg01no422_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:24 2005
         (501 letters)



>mm_chr14_83740302_83741202
          Length = 901

 Score =  830 bits (429), Expect = 0.0
 Identities = 480/497 (96%), Gaps = 1/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   acttttgtagaaaattatctgaggttgcttatatacttttcccgctcttctggacttgag 65
           ||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||||
Sbjct: 205 acttttgtagaaaattatctgaggttgcttatacactttttctgttcttctggacttgag 264

                                                                       
Query: 66  tttttaaaaagtatgatatagtgagttgttctctgacagttacttctatctggactttta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttaaaaagtatgatatagtgagttgttctctgacagttacttctatctggactttta 324

                                                                       
Query: 126 aaaagctgaagatttgctttggagaactaaagatctttctctttataatgaccactaact 185
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aaaagctgaagacttgctttggagaactaaagatctttctctttataatgaccacaaact 384

                                                                       
Query: 186 ttttctcccctttcttttaatcattgataattgtgaatcatttgaatcaatttcaaatgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttctcccctttcttttaatcattgataattgtgaatcatttgaatcaatttcaaatgg 444

                                                                       
Query: 246 ctttttattttttt-ctttaaatgaataaaatcaaatatattttatatatacagtctttc 304
           |   | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagatgattttttttctttaaatgaataaaatcaaatatattttatatatacagtctttc 504

                                                                       
Query: 305 tgtatgtctgtattctgtattgacttaatacttgtgacagattactttttttctgaggag 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tgtatgtctgtattctgtattaacttaatacttgtgacagattactttttttccgaggag 564

                                                                       
Query: 365 agacttataattagtcaacatttaatccataaactttaaaataagttatccagttgatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agacttataattagtcaacatttaatccataaactttaaaataagttatccagttgatgg 624

                                                                       
Query: 425 aatacttttttaatatagaagagacagactccaatatattccactaatgtatagtggtca 484
           |||||||||||| ||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 625 aatacttttttagtatagaagagagagactcaaatatattccactactgtatagtggtca 684

                            
Query: 485 acatggccactgttgga 501
           |||||||||||||||||
Sbjct: 685 acatggccactgttgga 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)