BAC Information

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BAC

Clone NameMSMg01-422C19
Chromosome14 (Build37)
Map Location 100,341,607 - 100,341,850
singlet/doubletsinglet
Overlap geneKlf12
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422C19.T7 (MSMg01no422_c19.b1)MSMg01-422C19.TJ (MSMg01no422_c19.g1)
ACCAG516627AG516628
length720776
length of high quality
(start - end)
244 (69 - 312)150 (66 - 215)
definitionCHROMAT_FILE: MSMg01no422_c19.b1 PHD_FILE: MSMg01no422_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:34 2005CHROMAT_FILE: MSMg01no422_c19.g1 PHD_FILE: MSMg01no422_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCANAAATCCGCGGAATTCACTTT
GCCTTCCGGATATCAGAACAAACATAGATTCCAGAAAGCCTGTCTCCTGG
AAATAACTGTCTCTCCTCCCATCCCATCCTGTCCACACAAACCCTGTTTC
TGGATGTGTGGGTGAAGTCCTGCTGTTTTTGTAACTTTTACATTTAGAAA
TTGACCCAAAGAATGGCCACTTCATTGTCTCTTTGTGCAGTTTCCATGGG
AACGGACATAAGAGGGCTCACTGAGGACAGGTACCACGCCCTCTGAATAT
TATATGCACTCTTATTTTCCAGGCAATAATTACATCTTCAGTAGCTGTTT
CTTCTGCTAAAGAGTACATCTGTTCAATGAAATTCTTGGTTCTGCAGTTA
ATGTGTGGCACCTTGGTACCTTGGGAGAGATAAAGAACAAAGCAGGCCCT
GGAATTTAATTAATTGCACCTGTTTATTAAGAGTTGGTCAAGTTCACAGG
GAGAACCAAGGAAGCAATCCTAAGAAAGTTCACTGATTAAGCAAACTGTG
TGCTTTCCCGTTTGCAGCGAGGAATGTGTTTTCTCAATGACTGACTTACT
CTGGCCAGGTTGACGGGATAATCCATCCCCCGGAATACCCGTGTCTTAGA
TATTCTTATTGATAACCCGAAAGTTGCTTTGCGAGTTTGCCAGCTCAACT
CACAATAATTTGTAATTTTG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCCGAATTACAAAAAGGTCAACAAGCTGAAGGGTCCAAGTGAGGAT
GCCTCAGTCCCACTTGGGAGGGAGAAGAAATCAACCACAAGGTGGGGCTG
GGGAGGGACCTGGGAGGAAAAGGGGATGGGGAGTAAGGGGAACATGATCT
GGTATTGGGTGGAGGNNNNNNNNNNNNNNNNNGNNNNNNNNNNTTTTTTT
TNNNNNNNNNNNGGNGNGGGGGTGGGGGGGTGGGGGGGGGGGNGGGGGGG
GGGGGGGGGGTTTGGGTGGGTTTGGNGNGGGGGGNGGGGGGGGGGGGGGG
TTTTTTTTTTCCCCCCCTTTTTTGGTGGTGTTTTTGTTCCCTTTTTTGTT
GGGTCTCCCCTTCTTTTTTTTTTTTTTTCCTCCCTTTCTTTTGTTCTTTT
TCCCTGCTTTTTCTTCTATCTTTCCCTTCATTTCTCCCCTTTTTCTTGCG
TCTGCTCCTTCTTCTCCTTCGTTTTTTGCCCACTATTTTTCTTTTCCCGT
TTTTTCTTCTTCTATTTTTTCTTTCCTTTGTGCCTATGTCTTATACCTTT
CCTTTTCTATTTACCTTCTTCTTTTCCTTTTTCTATTATTTTTTGATCTC
TTTCTTTCTACTATTCCTCTTACCGACTATTTTTTTTTTTTTTCTTCTCC
GGACCGCCCGTGTATTCGTTCGCCGTCTTTCTTTATCCTCTCCGCACGTC
GTCTTCTTCTATTTGTCCGTGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_c19.b1 MSMg01no422_c19.b1 CHROMAT_FILE:
MSMg01no422_c19.b1 PHD_FILE: MSMg01no422_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:34 2005
         (244 letters)



>mm_chr14_100341407_100342050
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacatagattccagaaagcctgtctcctggaaataactgtctctcctcccatcccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaacatagattccagaaagcctgtctcctggaaataactgtctctcctcccatcccatc 385

                                                                       
Query: 61  ctgtccacacaaaccctgtttctggatgtgtgggtgaagtcctgctgtttttgtaacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtccacacaaaccctgtttctggatgtgtgggtgaagtcctgctgtttttgtaacttt 325

                                                                       
Query: 121 tacatttagaaattgacccaaagaatggccacttcattgtctctttgtgcagtttccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacatttagaaattgacccaaagaatggccacttcattgtctctttgtgcagtttccatg 265

                                                                       
Query: 181 ggaacggacataagagggctcactgaggacaggtaccacgccctctgaatattatatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaacggacataagagggctcactgaggacaggtaccacgccctctgaatattatatgca 205

               
Query: 241 ctct 244
           ||||
Sbjct: 204 ctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)