BAC Information

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BAC

Clone NameMSMg01-423L04
Chromosome14 (Build37)
Map Location 99,167,113 - 99,368,945
singlet/doubletdoublet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423L04.T7 (MSMg01no423_l04.b1)MSMg01-423L04.TJ (MSMg01no423_l04.g1)
ACCAG517793AG517794
length830747
length of high quality
(start - end)
129 (24 - 152)552 (63 - 614)
definitionCHROMAT_FILE: MSMg01no423_l04.b1 PHD_FILE: MSMg01no423_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:26 2005CHROMAT_FILE: MSMg01no423_l04.g1 PHD_FILE: MSMg01no423_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,167,113 - 99,167,229)(99,368,550 - 99,368,945)
sequence
CCGCTATACCACTCACTATTCGGAGAGGATCCGCGGAATTCCCCCCCCCA
CGAATCCTTATGCTAGCTTCATAAAACTACATTACATTCTATTCCCTAGC
ACCAGATAGGCTTATCATAGGACCCCTTGGATTGTTGTTGAAATATAACT
TAAATATAAGCACTTCTACTTCAGGAGAGTTANGAACCTGCCCNNNTTNN
CCATCTTTNNGNTGGNTTGTNNNNTTTTGTTGATGAAAAAATCCNNNNNN
NCNNNNCACTATTTTNNTTNNTNNNNNNNNNCTCTATTTNNNNNNNNNNN
NNNNNTCTTCNNNNGCCATCTCCCCTTTTACTAATATAAAAANNNNNNNT
TTTTCTTTTTTTTTTTTTTTTAAAACCTTAAAATTTTTTTAAAAGGGGAA
GGGGNCCAAANCTTCCCCGAAAAAAAATCTTCCCTTGTCCCCGGGGGGGA
AAAATTCTTAGGGGGTTTATACCACCCCTTTTNNTTCCCCTTCTTTCTTC
ATAAAAAACAAACCCCCCCCCCCCCCTTCCTCTTTCTCAAAATAAAAAAA
AAAAAAAANANAAAATTNCNNTTAACTTAATAATTTTTATTTTTCCTTTC
CCNCNCCCCCCNCCCNNCCCCTTTCCCCTNCCNAACCAAAACCACAAATA
AATTTCTCCCCCTATATCTTATCTCCTTTATTTTTTTTTACCATTTTTTT
TTTTATTATTTTNNTTTCTATCTCTTCCCTCCCCTTTCTTCCTTTCCATT
CCTTCCCCCCTTTCTTTCCCCCCTTTTCAACCCCTCCCCCTTTTCTTTTT
TTTACTCTTCCGCCTTTTGGCGCGGGGGGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAAGGCCAAGCTACCAAACAAAGGTGGCTCCATTTCCTT
CTAAAGCACCTTGAGAAAAGGAGATAGCATGGGCTTTCTTGGTAAAGCAT
TACATATCAGTAAGATTTTTCTACTCACGCAGCATTTTCTCTTTTTGTGC
TTTTTCTCTTTTCTTGAGTTGCTCAACTACTTCTGCCACCTATTTTAAAA
AGTTTGTCTCATTTATTTTTTATGTGTATGGGAGTTTTGCCTGAATGCAT
TTGTCTGTGTACCATGTGACTACAGAGGTCATGAAGGCCAGAGGAAGATA
TTAGATGCTCCTGAGACTGGAGTTATAGATGGTTGTCAGTGGTCATATAG
GTGCTGGAAACTGAACCCGGGTCCTCTGGAAGAACAGCCAATATATTTCT
TTTTAATATTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTAT
CCCAAAAGTCCGCCATACACTCCCCCCCCCACTTCCCTACCCACCCATTC
CCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAGAGTTTGC
ATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAAGCCATCTTTTG
ATACATATGCAGCTAGAGTCAAGAGCTCCGGGGGACTGGTTAGGTCATAA
TGGTGTTTCACCTATAAGGTTGCAGATCCCTTTAACTCCTTGGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_l04.b1 MSMg01no423_l04.b1 CHROMAT_FILE:
MSMg01no423_l04.b1 PHD_FILE: MSMg01no423_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:26 2005
         (129 letters)



>mm_chr14_99166901_99167429
          Length = 529

 Score =  219 bits (113), Expect = 7e-62
 Identities = 116/117 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattcccccccccacgaatccttatgctagcttcataaaactacattacattctattcc 72
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcccccccccaagaatccttatgctagcttcataaaactacattacattctattcc 272

                                                                    
Query: 73  ctagcaccagataggcttatcataggaccccttggattgttgttgaaatataactta 129
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctagcaccagataggcttatcataggaccccttggattgttgttgaaatataactta 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no423_l04.g1 MSMg01no423_l04.g1 CHROMAT_FILE:
MSMg01no423_l04.g1 PHD_FILE: MSMg01no423_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:26 2005
         (552 letters)



>mm_chr14_99368550_99369501
          Length = 952

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccaagctaccaaacaaaggtggctccatttccttctaaagcaccttgagaaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaggccaagctaccaaacaaaggtggctccatttccttctaaagcaccttgagaaaagga 337

                                                                       
Query: 61  gatagcatgggctttcttggtaaagcattacatatcagtaagatttttctactcacgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gatagcatgggctttcttggtaaagcattacatatcagtaagatttttctactcacgcag 277

                                                                       
Query: 121 cattttctctttttgtgctttttctcttttcttgagttgctcaactacttctgccaccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cattttctctttttgtgctttttctcttttcttgagttgctcaactacttctgccaccta 217

                                                                       
Query: 181 ttttaaaaagtttgtctcatttattttttatgtgtatgggagttttgcctgaatgcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ttttaaaaagtttgtctcatttattttttatgtgtatgggagttttgcctgaatgcattt 157

                                                                       
Query: 241 gtctgtgtaccatgtgactacagaggtcatgaaggccagaggaagatattagatgctcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtctgtgtaccatgtgactacagaggtcatgaaggccagaggaagatattagatgctcct 97

                                                                       
Query: 301 gagactggagttatagatggttgtcagtggtcatataggtgctggaaactgaacccgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gagactggagttatagatggttgtcagtggtcatataggtgctggaaactgaacccgggt 37

                                               
Query: 361 cctctggaagaacagccaatatatttctttttaata 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  cctctggaagaacagccaatatatttctttttaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)