BAC Information

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BAC

Clone NameMSMg01-423M19
Chromosome14 (Build37)
Map Location 30,515,867 - 30,516,265
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423M19.T7 (MSMg01no423_m19.b1)MSMg01-423M19.TJ (MSMg01no423_m19.g1)
ACCAG517871AG517872
length955757
length of high quality
(start - end)
---399 (57 - 455)
definitionCHROMAT_FILE: MSMg01no423_m19.b1 PHD_FILE: MSMg01no423_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:34 2005CHROMAT_FILE: MSMg01no423_m19.g1 PHD_FILE: MSMg01no423_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATATAATATAAAAGTAATTTTATTTTAAAAGAAACAACGAAAAAAAAAG
TTATGAAGAACTAGGATAATAACGACGGACTACAATCTATGTCCATAAGC
GGGCTAAAGCACCGCATTTGGCGCCATTCGGTTCCGTGGCGTGGCCGTCC
CGCCCTTTTCTCCTTTCCCACTATANGAGCGCGCCGGCGATGGAGCGCCC
TGCAGGCCACTTCCCCCCGTGCGCGTTTTCTTTTTCCCACATATTGTTTG
AAAATATTATTAATATCCTTAAAAAAAAAAATTTTGGGGGGGGGACGCGG
CCTAAATAAAAGGGAAAACTTCCAACCTTTATTCATCGGCGACCAAAAAA
AAGAGGAGGAGGGCGGGGNGGGGGGNAAAAAATTTCTCCCTAAATGGGGA
AAATTTATTTTCTCCCCCACCAAAGGGTAACGGTGCGATTTAACGGGGTT
TATTTTTCCATAAATATTTGGGCCCTTAAATTTTTGTTTTTTTAAAATTT
TTGTAAAAAAATTTTTAAAAGATTTTTTAGAAAANTTATAAAAAAAAAAA
CCTTTTTTTTATAAAATTTTTTAAAGAAAAATTTTGTTTTTTTAAAAGAA
AAATATTTAGAACTAAAAAAAAAATTTTTTTTAATAAAAAAAAATTTNTC
TTTTTTAAAAAAAATGTTTTTTAAAAAGATTTAAAAAAGGAGGGGTTTTC
CTCTTTTTGTGGGGGAGAGAAAAAAAGGGTTTCTTTTTTTTTTATAAAAA
CAAAAAAAAATAGGCGGGGAGTTTTTTATGGTGGGGGAGAAAAAAAAAAA
AGGAGGGGGGCCGCGACGCAATTTTTGTTCGCGCCCCCTCTTCTCTTCCT
CCACCAAAAAAGAGGTTTGAAAGAAGACCCTCCCTCCGCGGAAAAGAGAT
ACCCACAAAAAATAATTTTTGTCTCCCCTCTTTCGCCCCCCGCCCTCTCT
TTTGT
CTGGAGGCCGCCTGTTTCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTGCCACTCAGATAATCAGTTTCCCTTCCTTTTGGTTGTTTTGG
CATGATGCCAGTCAAAGAAACCTTTGTGTCAGAGAGTGCAGGCGCCTTGT
TTACAGTTCTGAAATTGCAGCCTTTTCTTTGGTTCTGTACAGGATAGAGT
TCGAAGGTCCTTCCGTGTGGAGCTTCTGCTCCAGAGGGCTGGAGATCAGA
CCTCATTTGTTTCCCAGTCTGCTCTTCAGTAGGTGGGGGCCCTTCCTTCA
TTTTATATGATACTAGCACCCCTCTTTCTACCAGCAGCACCTGCCTCTCC
TCTGTCCACAGCTGGCATCTGCAGGAGGACAGGGAAATGTGGAGTTGCCG
CTGGCTCTACCCAGCTTTGCAGGCTGGCACCAGACTCGTCAGGGAGGGCT
CAGTCGAATGGCCAATAGAGGATTAAAACAGCTCCCGTAGTAAGGAAAGC
AGAAGTGATACCCGATTTTAGTAACAAAAAAAACTACATTTCTGCTAACA
TTCTCCCCCAAGAGTTCTTGTTCCGTAGCCTTGCTCTTTGAGCTGCGCAT
GACAATGGAGTCATCTCTGAATATTATAGGCAAGAATATACGTTATATTA
CATTTGACATATGACGAAATTTTGTGTCACTTTTTTACCGTGAGTATTTT
GATTTTTACTTCCCCCCTAAATATTCCTTTTTTCCCTATCCATTCCCCTT
TCGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_m19.g1 MSMg01no423_m19.g1 CHROMAT_FILE:
MSMg01no423_m19.g1 PHD_FILE: MSMg01no423_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:34 2005
         (399 letters)



>mm_chr14_30515667_30516465
          Length = 799

 Score =  725 bits (375), Expect = 0.0
 Identities = 393/399 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgccactcagataatcagtttcccttccttttggttgttttggcatgatgccagtcaaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 599 ttgccactcagataatcggtttcccttccttttggttgttttggcgtgatgccagtcaaa 540

                                                                       
Query: 61  gaaacctttgtgtcagagagtgcaggcgccttgtttacagttctgaaattgcagcctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaaacctttgtgtcagagagtgcaggcgccttgtttacagttctgaaattgcagcctttt 480

                                                                       
Query: 121 ctttggttctgtacaggatagagttcgaaggtccttccgtgtggagcttctgctccagag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 479 ctttggttctgtacaggatagagttcgaaggtccttccgtgtggagcttctgctgcagag 420

                                                                       
Query: 181 ggctggagatcagacctcatttgtttcccagtctgctcttcagtaggtgggggcccttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggctggagatcagacctcatttgtttcccagtctgctcttcagtaggtgggggcccttcc 360

                                                                       
Query: 241 ttcattttatatgatactagcacccctctttctaccagcagcacctgcctctcctctgtc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttcatttcatatgatactagcacccctctttctaccagcagcacctgcctctcctctgtc 300

                                                                       
Query: 301 cacagctggcatctgcaggaggacagggaaatgtggagttgccgctggctctacccagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cacagctggcatctgcaggaggacagggaaatgtggagttgccgctggctctacccagct 240

                                                  
Query: 361 ttgcaggctggcaccagactcgtcagggagggctcagtc 399
           ||| |||||||||||||||||| ||||||||||||||||
Sbjct: 239 ttgtaggctggcaccagactcgccagggagggctcagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)