BAC Information

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BAC

Clone NameMSMg01-424C15
Chromosome14 (Build37)
Map Location 46,681,688 - 46,845,250
singlet/doubletdoublet
Overlap geneLOC218963
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424C15.T7 (MSMg01no424_c15.b1)MSMg01-424C15.TJ (MSMg01no424_c15.g1)
ACCAG518149AG518150
length728845
length of high quality
(start - end)
249 (68 - 316)142 (73 - 214)
definitionCHROMAT_FILE: MSMg01no424_c15.b1 PHD_FILE: MSMg01no424_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:02 2005CHROMAT_FILE: MSMg01no424_c15.g1 PHD_FILE: MSMg01no424_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,845,002 - 46,845,250)(46,681,688 - 46,681,829)
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGTTTCCGTCACCCCCCTCCCCCCTTTGGCCTCCAAGTTTA
TTTATCTGAGTCTTCTCACGAGGCATACTCTTGATCCAAACCTCCTCATA
GAAACGTAGGCTATGGAGATGGATAAAATACTTCTTTAAAATGAGGCCCT
GAGTCTGGGATCACCAGAACCTATGTAAAACTAAACTGGTAGTGCATGTC
TGCAATCCCGGTGCTCCTACCTATGGTGAACCAAAGAAGCAGGAAAATAC
CTGGAAGCTCGTGAGCTTTTATGCCTCGAATACACAGTGAGCAGCTGGAG
ACCTTAGACAAGGTAGAAGTCAAGGACTGACACCCCAGGTAGCTGCCTTC
CACACAGGCACGATGGCACTCATGCACTCACACATACACACACCAAACCC
AGTATACACACACACACACACACACACACACACACACACACAGACCAAAA
ATAAATAAATACAAGGATTTGAAGTGCACTTACATATTGTTCTTGCCTCA
AGTGTTGGCATCTAACACAGTAAACGTGCTGTCAGATTTGAGATGTCTAC
CAGAAGATGCTGTTGCTTTTGCCACACACAAGAAATGCTCCTGTTTGCTA
TCTAGACACATGGCCATGTGTCTAAGATGATTCTCAAACCCAAAATGGGC
GTATATCTTTAAATTCTTCCATAGAGAA
ACGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTATGGTTCTTGAATAGTCACCTGGGT
TTGCACTGCAGATTGCATTGTTATCAATCATAGATCTCCCTAAAGTGACA
AACTATTTAAGAATGTTTGATGATTAGCCTGTGTGGTAAGGGAAGGGAAG
GGGAAGGGGAAGGGGTAAGTNTATCCTCCCATTACTTTCACAACTCTTTT
TTTTTAATCTTTCCATTTCCGTTCCCTTCCCCATCTTTTCTTCTCCCAAC
CCCCCGCCGACGATTTTTTTTTCTTTTCCTTTTTCCCAACCCCCCCACCT
CACTTAACTTCTCTTATTACCCCTTTCACCTTCAATTATTTTTTTACTCC
CTTCTCCACTTTTTTCCCCTCCCTTTTCCCGTAATTCCTTCTATCTAACT
TTTTTTCTCATTACTCAATCTTTTTTCACACTTTTCTCTTTTTCCTCACC
CTCTTTTCATTCCTCCTCTCCCTCCTTTTTTTGTCCCTCTTACCTTCTTC
CCTTTCTCCCCTTCTTCATTTTTACCTTTTCAACCCCCCCTTTTCTACTC
CTTCTCTCTCCCTCATTTTTTTTCCCTTTCCCTTTCTTTCTTTTTTCCTC
TTTTTTCCCTTTTTCCCCTTTTTTCGTCCTCCTCTACTCCTCTCATTTCC
CTCTTTCCTACTTTCCGCTCCCCCCTTTCCTTCTTTTTTTCTCTCGCTTC
TTTCTACTTGATCTCACCCTTCCATTTCTTTCTTTTTTTACCCTCTCCCT
TTTCTTACTTCGTTTTCTTTACTCTTCTTTTCTATCCTTTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_c15.b1 MSMg01no424_c15.b1 CHROMAT_FILE:
MSMg01no424_c15.b1 PHD_FILE: MSMg01no424_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:02 2005
         (249 letters)



>mm_chr14_46844802_46845450
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacccccctcccccctttggcctccaagtttatttatctgagtcttctcacgaggcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcacccccctcccccctttggcctccaagtttatttatctgagtcttctcacgaggcata 390

                                                                       
Query: 61  ctcttgatccaaacctcctcatagaaacgtaggctatggagatggataaaatacttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctcttgatccaaacctcctcatagaaacgtaggctatggagatggataaaatacttcttt 330

                                                                       
Query: 121 aaaatgaggccctgagtctgggatcaccagaacctatgtaaaactaaactggtagtgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaatgaggccctgagtctgggatcaccagaacctatgtaaaactaaactggtagtgcat 270

                                                                       
Query: 181 gtctgcaatcccggtgctcctacctatggtgaaccaaagaagcaggaaaatacctggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtctgcaatcccggtgctcctacctatggtgaaccaaagaagcaggaaaatacctggaag 210

                    
Query: 241 ctcgtgagc 249
           |||||||||
Sbjct: 209 ctcgtgagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no424_c15.g1 MSMg01no424_c15.g1 CHROMAT_FILE:
MSMg01no424_c15.g1 PHD_FILE: MSMg01no424_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:03 2005
         (142 letters)



>mm_chr14_46681488_46682029
          Length = 542

 Score =  259 bits (134), Expect = 4e-74
 Identities = 140/142 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatggttcttgaatagtcacctgggtttgcactgcagattgcattgttatcaatcata 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attatggttcttgaatagtcacctgggtttgcactgcagattgcatcgttatcaatcata 260

                                                                       
Query: 61  gatctccctaaagtgacaaactatttaagaatgtttgatgattagcctgtgtggtaaggg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gatctccctaaagtgacaaactatttaagaatgtttgatgatgagcctgtgtggtaaggg 320

                                 
Query: 121 aagggaaggggaaggggaaggg 142
           ||||||||||||||||||||||
Sbjct: 321 aagggaaggggaaggggaaggg 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)