BAC Information

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BAC

Clone NameMSMg01-425J24
Chromosome14 (Build37)
Map Location 57,564,253 - 57,564,724
singlet/doubletsinglet
Overlap geneZmym2
Upstream geneCma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118
Downstream geneLOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425J24.T7 (MSMg01no425_j24.b1)MSMg01-425J24.TJ (MSMg01no425_j24.g1)
ACCAG519262AG519263
length760770
length of high quality
(start - end)		477 (65 - 541)424 (66 - 489)
definitionCHROMAT_FILE: MSMg01no425_j24.b1 PHD_FILE: MSMg01no425_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:53 2005CHROMAT_FILE: MSMg01no425_j24.g1 PHD_FILE: MSMg01no425_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCGGAATTCTGAGC
AAGTCCCGCAGACTCAGGCTATGCTTGTTAATAACTACCGTGTTGTTTTA
CACAGTTATATGCATTCTATCCAACATATACTACAGTGACAAAAGGTCTC
CAGAAAGAAAAATAAGACAAATTATACAATTAGGAAATAAAGGTGTTCAC
AAGATAACTTTTCTATGAAGGATTCATGACATGGCTTCTCATTCTTTTTC
CCATGGGGTATTATTTTGTAATATATTAGACACACCTAGAACTCACCCTC
CAAAACCTGAGCACAGAGACCAAGTGGGTGTCTATATTCTATTTTAAATT
AAAAGCAAACACCAAGCTGGGGGGTGGTAGCACACGCCTCTAATCCCAGC
ACTTGGGAAGTAGAAACAAGTGGATCTCTGTGAGTTCAAAGCCACCCTAG
TCTACTACAGCACTAGTTCCAGGATAGCTAAGGCTACACGAAGAAACCCT
ATCTAAAAAAAACAAAAAACAAAAAACAAAAAACAAACAAACCAAAAATA
AAACCAACAACAAACCCATAGTACTAATTACAATCCACTACAACCTCTGA
GAACACTGTAAAACAACTACTACAATTGTCTTCTCGTATAAAGGGAACAG
GGATTTTCGGACATAAAATGGATTCTAAGAATTACCAGAAGGCTTCCGGG
AGGAATAAATGGCCCCCACAAATAAAAAAAAACCCCCTATTAAATCCTGC
CCCCTATGGN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGATCCACCTGCCCCTGCCTCCTGAGTGCCATC
ATTCTCAGTTTCATATAAGTAAGGGCTTTTACACAAGAAAACAAAAATAA
ATCAAGTCTGAAGAAATTTTTTTTTAGATTCATACTTTCTCAAATTTCAC
ACATGGAGTATACTTTCACAAGAAAAATTAACAACACTGAAAAGTTAACT
ATATATACATACATATATATATGTATACACACATATACATACCACATTTT
AATTCTTATATTTATACTAATAACTATATATTCTTTATAATTCTCATAAC
AAAACTAAAACATTTACACATTAAGTTGGAAACAGAAATATAAAATCAAT
AAAACACAAATTACTTCTATTTACCACAACAAATAACTGTTTTGCACAAA
AAATGTTTTAAAGAAATAAAACTCAATTTGGTTTAATAACAAACAGCTGT
TGCTTCTTAAGCTGTTTGAATGCACTTTTCTCTTTTTTGCCTTCTTTTTG
GGTTTTCAGAAAAGGGTTGTGTGTACCCTGGGTCCTCCTGGAACTTGCTC
TGGNGAACAAGTTGGCCTAAAGTTCACAAAAATCCACTTCCTGTGGGCGG
AAGGGGAAATAAAAGGGGCAACCCCCCCCCGGGGCCCGGAGAGGATTTCT
TTTAATTGGTAAAAGGAATTTTGCCCCCCCTGCTCTTATAAATAAAGGGA
AGTTTCCCCAACAATTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_j24.b1 MSMg01no425_j24.b1 CHROMAT_FILE:
MSMg01no425_j24.b1 PHD_FILE: MSMg01no425_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:53 2005
         (477 letters)



>mm_chr14_57564225_57565101
          Length = 877

 Score =  851 bits (440), Expect = 0.0
 Identities = 463/472 (98%), Gaps = 3/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctatgcttgttaataactaccgtgttgttttacacagttatatgcattctatccaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 caggctatgcttgttaataactaccgtgttgttttgcacagttatatgcattctatccaa 441

                                                                       
Query: 61  catatactacagtgacaaaaggtctccagaaagaaaaataagacaaattatacaattagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catatactacagtgacaaaaggtctccagaaagaaaaataagacaaattatacaattagg 381

                                                                       
Query: 121 aaataaaggtgttcacaagataacttttctatgaaggattcatgacatggcttctcattc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 aaataaaggtgttcacaagataacttttctatgaagaattcatgacatggcttctcattc 321

                                                                       
Query: 181 tttttcccatggggtattattttgtaatatattagacacacctagaactcaccctccaaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 tttttcccatggggtattattttgtaatatattagatacacctagaactcaccctccaaa 261

                                                                       
Query: 241 acctgagcacagagaccaagtgggtgtctatattctattttaaattaaaagcaaacacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctgagcacagagaccaagtgggtgtctatattctattttaaattaaaagcaaacacca 201

                                                                       
Query: 301 agctggggggtggtagcacacgcctctaatcccagcacttgggaagtagaaacaagtgga 360
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agctggggggtggtagcacatacctctaatcccagcacttgggaagtagaaacaagtgga 141

                                                                       
Query: 361 tctctgtgagttcaaagccaccctagtctactacagcactagttccaggatagctaaggc 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tctctgtgagttcaaggccaccctagtctactacagcactagttccaggatagctaaggc 81

                                                               
Query: 421 tacacgaagaaaccctatctaaaaaaaacaaaaaacaaaaaa---caaaaaa 469
           ||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 80  tacacgaagaaaccctatctaaaaaaaacaaaaaacaaaaaaaaacaaaaaa 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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