BAC Information

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BAC

Clone NameMSMg01-426B05
Chromosome14 (Build37)
Map Location 19,037,491 - 19,247,690
singlet/doubletdoublet
Overlap geneNr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Upstream geneThrb, LOC627608
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426B05.T7 (MSMg01no426_b05.b1)MSMg01-426B05.TJ (MSMg01no426_b05.g1)
ACCAG519605AG519606
length780784
length of high quality
(start - end)		494 (38 - 531)506 (75 - 580)
definitionCHROMAT_FILE: MSMg01no426_b05.b1 PHD_FILE: MSMg01no426_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:28 2005CHROMAT_FILE: MSMg01no426_b05.g1 PHD_FILE: MSMg01no426_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:28 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(19,037,491 - 19,037,980)(19,247,185 - 19,247,690)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
AAACCTAGCTGTATATCCCATAAAAGCCATACCCACTGAACGTAAGCAGC
AGTTATGGTCCCTACTGAATGACAGACACACCATCACTTTCCTCTTTGAC
AATAGGAGTTTATCTTTCTCAAGCTCTCCTAACTGTACCACAGAAGTTCA
AATCCTGTAGCAACAAGTTAAAACTACAAAATAAGGCATTCTGATTAAAT
GTCATAAAAGTAACAGGCTTTAAGTAGTAAAGCAGGTTCTTAATGTCGTT
ACAATTTCACATAATCTAGCATTACACAGAAAGTAATTTTACCCCCAAAA
TACAATGAATTGCTACTTTGGGGGGCACGGGGTGTTGTTCATGAATCTTT
AACTTTGGCCATCTTTCCTACCATGATCTCTAAGCCTGTAGGTAGGTCAC
TTACTAAAAGGTTTCTCAAATTATATTAAATCTAAATTGACAAAATCCCT
GTAGTATTACTTAGGGAAAGAAAGAAAAGTGGACTTGGCACAAACATGCC
AGCAGGTCACAAAGTTTTCCTAAACAAAACCTTCTCCATACAGAATCCAA
ATCTGCCATCCGCCTGAAGCACGAAAGAGGCAGGAATACCCCCTCTACTA
ATAGCCGAGGTAGAAAGCTGAAACCTGGAACATCTATTACCTCCACTGGC
GAATGGATCAAAAAGGTTCTTAAAAAGATTTTTTTTTAAAACCCAAAATG
AAGGGCCCTTCCCCCTTTTAATTAAAGGGG

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTAAGCAAATTGGTGATACCTGTT
TCAAAGTAAAAAACATAAACAGGGCTGAAGATGAAGCTCCGTGGTAGAGC
ACTTGTACCAGAAAGGTGTCAAAGCTGTTGTCTTACTATTAGCTAGACAG
ACTATGGGGAGCAGTGGAGACTGTGGTAAAATGGCAATTATGTATCCACA
AGATCAAGTGGTAAATATGGCAATTATCTATTCACAGGACCCAGAATGAC
TTCCATGTAGTTACAGTCTGTCACTGCCTTGCTGCCAGGACTGTGCATTT
TCAGAAAAGGATACTAATGTGGGGTCTCCCTACTTATACAATAGCCAGAG
ACATGTGAGGTCTCTGGAGATATATGGGCCATGTTGAGGAAAGTCTGTCC
TCTCTATAACATACTATGCCATCCCATTCTGTAATTTGCACATATTAGAA
TGCCTAGCAATATAAATCACATCAATTAAAGAAGCATTTATTGAATACCT
ACTGAATACCAGAAAGTAAGCCAAGACAAGGACTAAAAAGGCACTTGTCC
CCCTTGGCTCATGTTCTAACAGGCCAGAGAGATGTAATGAGGAGTCAGGG
CACCTGAGATCAGGGCCGCAATGAAGGCCATAATACTTTCCAGTGGAAAG
AAACTTGGCAGTACTGTAGTGCCTTACCCAATGGTAGGGTAACCTTGTTT
TATCACAATGCTTTCCCCTCTATACCATAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_b05.b1 MSMg01no426_b05.b1 CHROMAT_FILE:
MSMg01no426_b05.b1 PHD_FILE: MSMg01no426_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:28 2005
         (494 letters)



>mm_chr14_19037287_19038180
          Length = 894

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaaaacctagctgtatatcccataaaagccatacccactgaacgtaagcagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaaaacctagctgtatatcccataaaagccatacccactgaacgtaagcagca 264

                                                                       
Query: 65  gttatggtccctactgaatgacagacacaccatcactttcctctttgacaataggagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttatggtccctactgaatgacagacacaccatcactttcctctttgacaataggagttt 324

                                                                       
Query: 125 atctttctcaagctctcctaactgtaccacagaagttcaaatcctgtagcaacaagttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctttctcaagctctcctaactgtaccacagaagttcaaatcctgtagcaacaagttaa 384

                                                                       
Query: 185 aactacaaaataaggcattctgattaaatgtcataaaagtaacaggctttaagtagtaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactacaaaataaggcattctgattaaatgtcataaaagtaacaggctttaagtagtaaa 444

                                                                       
Query: 245 gcaggttcttaatgtcgttacaatttcacataatctagcattacacagaaagtaatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaggttcttaatgtcgttacaatttcacataatctagcattacacagaaagtaatttta 504

                                                                       
Query: 305 cccccaaaatacaatgaattgctactttggggggcacggggtgttgttcatgaatcttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccccaaaatacaatgaattgctactttggggggcacggggtgttgttcatgaatcttta 564

                                                                       
Query: 365 actttggccatctttcctaccatgatctctaagcctgtaggtaggtcacttactaaaagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actttggccatctttcctaccatgatctctaagcctgtaggtaggtcacttactaaaagg 624

                                                                       
Query: 425 tttctcaaattatattaaatctaaattgacaaaatccctgtagtattacttagggaaaga 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 tttctcaaattatattaaatctaaattgacaaaatccctgtagtattatttagggaaaga 684

                     
Query: 485 aagaaaagtg 494
           ||||||||||
Sbjct: 685 aagaaaagtg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_b05.g1 MSMg01no426_b05.g1 CHROMAT_FILE:
MSMg01no426_b05.g1 PHD_FILE: MSMg01no426_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:28 2005
         (506 letters)



>mm_chr14_19246985_19247890
          Length = 906

 Score =  948 bits (490), Expect = 0.0
 Identities = 502/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctaagcaaattggtgatacctgtttcaaagtaaaaaacataaacagggctgaagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acctaagcaaattggtgatacctgtttcaaagtaaaaaacataaacagggctgaagatga 647

                                                                       
Query: 61  agctccgtggtagagcacttgtaccagaaaggtgtcaaagctgttgtcttactattagct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agctcagtggtagagcacttgtaccagaaaggtgtcaaagctgttgtcttactattagct 587

                                                                       
Query: 121 agacagactatggggagcagtggagactgtggtaaaatggcaattatgtatccacaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agacagactatggggagcagtggagactgtggtaaaatggcaattatgtatccacaagat 527

                                                                       
Query: 181 caagtggtaaatatggcaattatctattcacaggacccagaatgacttccatgtagttac 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caagtggtaaagatggcaattatctattcacaggacccagaatgacttccatgtagttac 467

                                                                       
Query: 241 agtctgtcactgccttgctgccaggactgtgcattttcagaaaaggatactaatgtgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agtctgtcactgccttgctgccaggactgtgcattttcagaaaaggatactaatgtgggg 407

                                                                       
Query: 301 tctccctacttatacaatagccagagacatgtgaggtctctggagatatatgggccatgt 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tctccctccttatacaatagccagagacatgtgaggtctctggagatatatgggccatgt 347

                                                                       
Query: 361 tgaggaaagtctgtcctctctataacatactatgccatcccattctgtaatttgcacata 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 346 tgaggaaagtctgtcctctctataacatgctatgccatcccattctgtaatttgcacata 287

                                                                       
Query: 421 ttagaatgcctagcaatataaatcacatcaattaaagaagcatttattgaatacctactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttagaatgcctagcaatataaatcacatcaattaaagaagcatttattgaatacctactg 227

                                     
Query: 481 aataccagaaagtaagccaagacaag 506
           ||||||||||||||||||||||||||
Sbjct: 226 aataccagaaagtaagccaagacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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