BAC Information

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BAC

Clone NameMSMg01-426B06
Chromosome14 (Build37)
Map Location 78,178,776 - 78,350,050
singlet/doubletdoublet
Overlap geneGm1587, Dnajc15, Epsti1
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
Downstream geneAU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426B06.T7 (MSMg01no426_b06.b1)MSMg01-426B06.TJ (MSMg01no426_b06.g1)
ACCAG519607AG519608
length791788
length of high quality
(start - end)		530 (40 - 569)496 (69 - 564)
definitionCHROMAT_FILE: MSMg01no426_b06.b1 PHD_FILE: MSMg01no426_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:28 2005CHROMAT_FILE: MSMg01no426_b06.g1 PHD_FILE: MSMg01no426_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,349,618 - 78,350,050)(78,178,776 - 78,179,271)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACGTAACTGTGGATCTCCCTGTGGAGTTTTTAGAGTATTTAATGTATCT
ATTTATCTATTGGTTACAATACTAGAAACATTAGGCTATACCTAACAGTG
TTTCAAAATTCATGGTTTTCATCATAAACTAATTTCAGTTTTGACTTCTA
ATTTTCCACATTAGCCATTTAAAAGAATATTTAAGCTCTTCATAGTGAGT
ATGATACCCATAATCCCAACACTCAAGAGGCTAAAGCAGAAGGATTGTGA
GTTCTAGGCCAGCCTAGGCTAGACTTTGTCTCAAAACTAGGATAAGAGGT
AAATGTGCGTATTTAAATTCTTATAGCTTTAAAGTGTCTTACTGCACAAT
TTCTAGTTTTACTATGTTTTCAAGAGTTGAGGATCTCCAGGATTTGGAGA
GACATTTGGAATGGACTGACAGTGTCTGAGGTTCCAGCCCAGGTTGGTGC
TATAGAAGTTAACACAGCGTTCACAAGGAATGCGTTCTCATATACCAGGT
GCAGTGCTTCATCGTCATGTGAAGTAATTGTTATTCCGTTCCTTTACTCC
TGTGTCCTTCTTTTGATTGAAGTATTTCCATGGAGAATTAGCTAAATAAA
TGAAGATTCTGTAAAGCTACCCTCGGTATTAGAGAATCTAAAAGGATTTT
GGTCTAATTTTTGAATCCAACAAAAATTTCTAGGCTCTGGTTATAAAAAA
TTATGGTTCTATTTCCTCTTGAGAAAAAGACAATTAATCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCCCTCCCACATGTCTTACTTACCCCTTAAT
CATTTTTCATTGAATATCTGACTCCCAAACCTCAAATCTTGATGTTACTT
TGTATTCTTCCTGTTCCTCTACACGTCATTGGCCAATATCCCTGGAAGGG
TGGTGAGGTAGAAGGTGTGGCAAGCTCAAGTGACCTCCATGGTTCAGTCC
CTAATGGGGGAAGATAGTTAGGGTCCATCCATGAGCCATTTTGGATAAGA
AAGTTGTATGGATTCCTGAGGATGGAGTCAGCACTATCCAGGTTACATCA
ACCTACAATAAGAGAATGAGTCCATGCTAGGGTGTGTTGCCTCTTCCTAT
AGTCACAACACTCAGATGACTGAGGCTGGAGGATTGCTGCAAGTCCAAGC
TCAGCCTGAACTACAGAGTGAGATCCTGTTTCAAAAACAGACAAAACAAA
AACAAGGTCATAACTTCATCTCCCTTCTGCAATCAAAACCATTGTGGCAG
AAGACCTCCTCTGTTGCCTGCAAGATGTGAGTCTTCCTAAGAGCCCTTTT
GTTATTTATTTTCTAAATTCCTTAGAGGGACTTCTCTTCCTTGTTAACAA
ATTAAACTGGGCTTGATAAAGGGTATATGCTGGCCTGTTTCTCTCTTTTA
TTGTCTAAATCTTTTTTATCGTTTTTCTAATATATGACCAATATCCCGCC
CTCTCCTGGTCAAACAATCTTTATACACCGTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_b06.b1 MSMg01no426_b06.b1 CHROMAT_FILE:
MSMg01no426_b06.b1 PHD_FILE: MSMg01no426_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:28 2005
         (530 letters)



>mm_chr14_78349121_78350050
          Length = 930

 Score =  814 bits (421), Expect = 0.0
 Identities = 430/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 98  tatacctaacagtgtttcaaaattcatggttttcatcataaactaatttcagttttgact 157
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tataactatcagtgtttcaaaattcatggttttcatcataaactaatttcagttttgact 871

                                                                       
Query: 158 tctaattttccacattagccatttaaaagaatatttaagctcttcatagtgagtatgata 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tctaattttccacattagccatttaaaagaatatttaagctcttcatagtgagtatgata 811

                                                                       
Query: 218 cccataatcccaacactcaagaggctaaagcagaaggattgtgagttctaggccagccta 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cccataatcccaacactcaagaggctaaagcagaaggattgtgagttctaggccagccta 751

                                                                       
Query: 278 ggctagactttgtctcaaaactaggataagaggtaaatgtgcgtatttaaattcttatag 337
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 750 ggctagactttgtctcaaaactaggataagaggtaaatgtgggtatttaaattcttatag 691

                                                                       
Query: 338 ctttaaagtgtcttactgcacaatttctagttttactatgttttcaagagttgaggatct 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ctttaaagtgtcttactgcacaatttctagttttactatgttttcaagagttgaggatct 631

                                                                       
Query: 398 ccaggatttggagagacatttggaatggactgacagtgtctgaggttccagcccaggttg 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ccaggatttggagagacatttggaatggactgacagtgtctgaggttccagcccaggttg 571

                                                                       
Query: 458 gtgctatagaagttaacacagcgttcacaaggaatgcgttctcatataccaggtgcagtg 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtgctatagaagttaacacagcgttcacaaggaatgcgttctcatataccaggtgcagtg 511

                        
Query: 518 cttcatcgtcatg 530
           |||||||||||||
Sbjct: 510 cttcatcgtcatg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_b06.g1 MSMg01no426_b06.g1 CHROMAT_FILE:
MSMg01no426_b06.g1 PHD_FILE: MSMg01no426_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:28 2005
         (496 letters)



>mm_chr14_78178576_78179471
          Length = 896

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccctcccacatgtcttacttaccccttaatcatttttcattgaatatctgactcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccctcccacatgtcttacttaccccttaatcatttttcattgaatatctgactcccaa 260

                                                                       
Query: 61  acctcaaatcttgatgttactttgtattcttcctgttcctctacacgtcattggccaata 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 acctcaaatcttgatgttactttgtattcttcctgttcctctacaagtcattggccaata 320

                                                                       
Query: 121 tccctggaagggtggtgaggtagaaggtgtggcaagctcaagtgacctccatggttcagt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctggaagggtggtgaggtaggaggtgtggcaagctcaagtgacctccatggttcagt 380

                                                                       
Query: 181 ccctaatgggggaagatagttagggtccatccatgagccattttggataagaaagttgta 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgatgggggaagatagttagggtccatccatgagccattttggataagaaagttgta 440

                                                                       
Query: 241 tggattcctgaggatggagtcagcactatccaggttacatcaacctacaataagagaatg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggatttctgaggatggagtcagcactatccaggttacatcaacctacaataagagaatg 500

                                                                       
Query: 301 agtccatgctagggtgtgttgcctcttcctatagtcacaacactcagatgactgaggctg 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtccatgctagggtgtgttgcttcttcctatagtcacaacactcagatgactgaggctg 560

                                                                       
Query: 361 gaggattgctgcaagtccaagctcagcctgaactacagagtgagatcctgtttcaaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggattgctgcaagtccaagctcagcctgaactacagagtgagatcctgtttcaaaaac 620

                                                                       
Query: 421 agacaaaacaaaaacaaggtcataacttcatctcccttctgcaatcaaaaccattgtggc 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 agacaaaacaaaaacaaggtcataactccatctcccttctgcaatcaaaaccattgtggc 680

                           
Query: 481 agaagacctcctctgt 496
           ||||||||||||||||
Sbjct: 681 agaagacctcctctgt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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