BAC Information

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BAC

Clone NameMSMg01-426C09
Chromosome14 (Build37)
Map Location 36,125,996 - 36,355,169
singlet/doubletdoublet
Overlap geneGrid1
Upstream geneGlud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426C09.T7 (MSMg01no426_c09.b1)MSMg01-426C09.TJ (MSMg01no426_c09.g1)
ACCAG519660AG519661
length799792
length of high quality
(start - end)
135 (71 - 205)461 (66 - 526)
definitionCHROMAT_FILE: MSMg01no426_c09.b1 PHD_FILE: MSMg01no426_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:34 2005CHROMAT_FILE: MSMg01no426_c09.g1 PHD_FILE: MSMg01no426_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,125,996 - 36,126,130)(36,354,709 - 36,355,169)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAGTGCGCGCGGAATTC
TCTGAGATTTTCAGAATGACTTCCTCAGAGCAGAGTCACCATTGTATCCA
TCACTGGAACTGCCTCTCTCAGGGACTTCAACTTGTAATTGAACTAACAG
AAACGTTATCACATTGACACCCCATCTATTCAAATGTGTTTCAAGAGTGT
GGCAGAAAATGGCATGGACTGTGGTGTCTGGTCACTGTGCTGGCTTATCT
AATCTGCAGGACCCCATATAGTATTGCCATGAAATGTCCCCAAGATTGGA
ACTTTGGCATCTTTATGTTTTTTTTAGTTGCTGAATGGCTCAACAAAATC
ACCTCTCTCTGGTATTCAGCTTGCCGAAGAAAACCACTGACCTTCTATCT
CTCATGCCCCACAAACCTTCAGTTCTTTTCCCTGTTAATGTATTGCCAAT
CTGGTAATACAAGCTTTTCCTCTGTAGCATCCTTCATGTTTCCCTAACCT
ATCTCAGATTTCAGTTCCCTTTCAAAATTATATGAATTGCTTAAGACTCC
AATTGCCTTTTTCATCATGTAGGTTGCTGGAATGCTGCACTAATCTCTTT
TATATGGTGTTTTCTCTTTCTATACTATTTTCTTTTATCGTATTTTCCAT
GTTCACTAATGTTTATTTTTTTTCTTCTATATATACTTATTATTTTACTT
ATTATTCTTTTTCCAATATTTCCCACTGCATATTTTTTTATTTTACTTTT
TTTTTTTACCACCCCATTTTTATCTTTATGTTAATTTGCTCTCTTCTTN
TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTGCGCAATCATAACGAGATTTGCTTGGCAATGCTCAAAACCCA
AAGCAAAGTAATTTAATAAGGGAGGCTCGGAGGGGGGCTCTCCTTGATCT
TTGGACTGTATTATCCCAAACCAATCACCATCAAACAGAATTAAGCAGTA
AGGGGTCATACAGGGGCCAAATGAGCCAGTTGTGTGTTAAAGCATCCCAG
AGAGGCAGAGTATGCTCCAATAGGTCCAGGGCAGAGGACTCTGGCTGTTC
TTAACCATCTCAGCCTTCCATGCTATGCTTATCTATGAACTGTCAGCCAT
CCTGCTCATTCATGCTTAAGACAGAAATGTTCATCACTGTGCCTATGCAT
TTCCACTTCTTAGTCACTGAACATTTATTCTGTTTGCTTTATAAAGGCAT
AAGTAATCTCCAAAGTTCCTCTGCTATTTCCTTAGGTCATTCCTGGGGAC
AGACAATATAAAAAGGAGCCTCACTGTATAGAAGCTAAGTCTGGCGGAAT
AGGCCAGACTAGGTCACTGACGAATGGATAATATTCTGTGAGGCTATGCT
CTGCTGTGCACAGTGCTGTGACTGTTAGGGTCCTGGCTTGTACGGTTTAC
ATGTTCTTACCTTTCCCATCTTTTTCTTTCTCTTTTGGCTTTAGAATGTC
TATCAGCATTTCTGTCCACCTGTTTCTTTCTCTTTTCTTCCTCTTTCTTG
GTACCTTTCTCCGGCATTTTTATTTTTATTATTTTACCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_c09.b1 MSMg01no426_c09.b1 CHROMAT_FILE:
MSMg01no426_c09.b1 PHD_FILE: MSMg01no426_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:34 2005
         (135 letters)



>mm_chr14_36125796_36126330
          Length = 535

 Score =  238 bits (123), Expect = 1e-67
 Identities = 132/135 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctcagagcagagtcaccattgtatccatcactggaactgcctctctcagggacttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctcagagcagagtcaccattgtatccatcactggaactgcctctctcagggacttca 260

                                                                       
Query: 61  acttgtaattgaactaacagaaacgttatcacattgacaccccatctattcaaatgtgtt 120
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 261 acttgtaattgaactaacagaaacgttatcacatcgccaccccatctattcaaatgtgtt 320

                          
Query: 121 tcaagagtgtggcag 135
           ||||||| |||||||
Sbjct: 321 tcaagagcgtggcag 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no426_c09.g1 MSMg01no426_c09.g1 CHROMAT_FILE:
MSMg01no426_c09.g1 PHD_FILE: MSMg01no426_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:34 2005
         (461 letters)



>mm_chr14_36354509_36355369
          Length = 861

 Score =  891 bits (461), Expect = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataacgagatttgcttggcaatgctcaaaacccaaagcaaagtaatttaataagggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cataacgagatttgcttggcaatgctcaaaacccaaagcaaagtaatttaataagggagg 602

                                                                       
Query: 61  ctcggaggggggctctccttgatctttggactgtattatcccaaaccaatcaccatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctcggaggggggctctccttgatctttggactgtattatcccaaaccaatcaccatcaaa 542

                                                                       
Query: 121 cagaattaagcagtaaggggtcatacaggggccaaatgagccagttgtgtgttaaagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagaattaagcagtaaggggtcatacaggggccaaatgagccagttgtgtgttaaagcat 482

                                                                       
Query: 181 cccagagaggcagagtatgctccaataggtccagggcagaggactctggctgttcttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cccagagaggcagagtatgctccaataggtccagggcagaggactctggctgttcttaac 422

                                                                       
Query: 241 catctcagccttccatgctatgcttatctatgaactgtcagccatcctgctcattcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catctcagccttccatgctatgcttatctatgaactgtcagccatcctgctcattcatgc 362

                                                                       
Query: 301 ttaagacagaaatgttcatcactgtgcctatgcatttccacttcttagtcactgaacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaagacagaaatgttcatcactgtgcctatgcatttccacttcttagtcactgaacatt 302

                                                                       
Query: 361 tattctgtttgctttataaaggcataagtaatctccaaagttcctctgctatttccttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattctgtttgctttataaaggcataagtaatctccaaagttcctctgctatttccttag 242

                                                    
Query: 421 gtcattcctggggacagacaatataaaaaggagcctcactg 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcattcctggggacagacaatataaaaaggagcctcactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)