BAC Information

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BAC

Clone NameMSMg01-426M23
Chromosome14 (Build37)
Map Location 35,507,920 - 35,689,730
singlet/doubletdoublet
Overlap geneWapal, LOC100041341, Grid1
Upstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik
Downstream gene4930596D02Rik, LOC100040277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M23.T7 (MSMg01no426_m23.b1)MSMg01-426M23.TJ (MSMg01no426_m23.g1)
ACCAG520159AG520160
length824774
length of high quality
(start - end)		343 (71 - 413)428 (76 - 503)
definitionCHROMAT_FILE: MSMg01no426_m23.b1 PHD_FILE: MSMg01no426_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:29 2005CHROMAT_FILE: MSMg01no426_m23.g1 PHD_FILE: MSMg01no426_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,689,391 - 35,689,730)(35,507,920 - 35,508,347)
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGAGCGCGGA
ATTCTTGATTAATACCCATGCTGGTGGTTTTGAGGAAACGTGATTAACTC
AGACACACACCGTACAATCGTGCACTGTAAAATAAACTCTAGAGAGAATA
AAGGGTCGAACCAACACATCAAACAGCAAGAAATAGAAAAATATTTTTCT
CTTCTTTAGAGAGAGTGATATCTTTCAAGTATCATGCTGGCAAAAAGAAT
ATAAATAAAAAGATAATTGATTCAATACTATCAGAAGTCCCAAACTGCTG
GGCGTGGCCATGCGGGCCCAGAATTTCATCACTCAACAGGGGCAGGCAGG
AGGGTCCGAAGTTCAAGGCCAGTCTAGACTACATAGTGAGAGTCTGTCTC
AAAAATCTTTTTTTTTTTTTTGTAAGCACAAAAGCTTTGTGGAAAATAAA
CAAGACAGCTAAAGTTAAAATAGTCTATAAAAAAAATATTTGTAGCAAAA
TGGCTTAAGAAAAACTGTTTACCTTGACAAGTAAGAAGTTGGTATGAAGG
GTAAATTTTCCAAAAGCTTCCAAAAGGCCCCCAAAGAAAGGGGGTGAAAA
AAAAAATCCCCCCATTGGATGGACCCGAAGAAAAGGGTCCCCCTCCCTCC
AAAAAAAAAATAAGAAATACCTCCTTATTTCTTTTATAAAAAGGAGGGGG
AGGGGGGGAAAAATCTTCTTGTTGTTTCCTTGGAGGGGGTGGAAAAATTA
AATAAAAATAAATTTTCTTCATCTAACTCAAAAACAATAGATTCTTTTTC
TAAAAATTTTTTGACGGCACTAAN

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCTAATTATAAGCACCCA
TTCTCAGTAAAAGAGAAAATGTTTGATTTTTTGCTGATAGTACAAAAATA
CAACTAGAAAAGATATGTAATAGGTTTTGAAGTAAGAGAATAGGGTTAGA
GTACTTCATCAACCACTACTATTTTTAATCCTTTATTATTTTCTCCAACA
TTAATGTTTTTAAAAAACCTTGTGTTTTCTGATAACTTGAAACACTGGAA
AGCTAGCTAGTTTTGATTACCATTTCAGAAAACTTGGATTTTACAGAGGA
CTTGCCTGGTGTGCCTGAGAGTGTGAAGAAGCCCATAAGTAAACAAGGAG
ATAAATCCAAGGAAAATACCAGAAAGATTTTTAGTGGCCCCAAACGGGTA
AGTAAAGCATTAACACTGGTGTTTTTTTTTAATAAAAATGTGTGTGTGTG
TGTGTGTGTGTGTNNNNNNNTNTNNNTTNTNTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTCNTTTTATTTTNTTCTTTCTTCTCCT
NNTCCCCTTTTCCCCTTTCCTCTTCTTTTTTCTTTTTCTTTTTTCTTCTT
TCCCCTTTTCTTCCCTCCTTTTTTCTCTCTTTTCTTTTTTCTCCCCTCTC
TCCCTTTTTCCTCTTCTTTCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m23.b1 MSMg01no426_m23.b1 CHROMAT_FILE:
MSMg01no426_m23.b1 PHD_FILE: MSMg01no426_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:29 2005
         (343 letters)



>mm_chr14_35689305_35690047
          Length = 743

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gtggttttgaggaaacgtgattaactcagacacacaccgtacaatcgtgcactgtaaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtggttttgaggaaacgtgattaactcagacacacaccgtacaatcgtgcactgtaaaat 367

                                                                       
Query: 64  aaactctagagagaataaagggtcgaaccaacacatcaaacagcaagaaatagaaaaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaactctagagagaataaagggtcgaaccaacacatcaaacagcaagaaatagaaaaata 307

                                                                       
Query: 124 tttttctcttctttagagagagtgatatctttcaagtatcatgctggcaaaaagaatata 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttctctcttctttagagagagtgatatctttcaagtatcatgctggcaaaaagaatata 247

                                                                       
Query: 184 aataaaaagataattgattcaatactatcagaagtcccaaactgctgggcgtggccatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aataaaaagataattgattcaatactatcagaagtcccaaactgctgggcgtggccatgc 187

                                                                       
Query: 244 gggcccagaatttcatcactcaacaggggcaggcaggagggtccgaagttcaaggccagt 303
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gggcccagaattccatcactcaacaggggcaggcaggagggtccgaagttcaaggccagt 127

                                                   
Query: 304 ctagactacatagtgagagtctgtctcaaaaatctttttt 343
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctagactacatagtgagagtctgtctcaaaaatctttttt 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_m23.g1 MSMg01no426_m23.g1 CHROMAT_FILE:
MSMg01no426_m23.g1 PHD_FILE: MSMg01no426_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:29 2005
         (428 letters)



>mm_chr14_35507720_35508547
          Length = 828

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagctaattataagcacccattctcagtaaaagagaaaatgtttgattttttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagctaattataagcacccattctcagtaaaagagaaaatgtttgattttttgct 260

                                                                       
Query: 61  gatagtacaaaaatacaactagaaaagatatgtaataggttttgaagtaagagaataggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagtacaaaaatacaactagaaaagatatgtaataggttttgaagtaagagaataggg 320

                                                                       
Query: 121 ttagagtacttcatcaaccactactatttttaatcctttattattttctccaacattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagagtacttcatcaaccactactatttttaatcctttattattttctccaacattaat 380

                                                                       
Query: 181 gtttttaaaaaaccttgtgttttctgataacttgaaacactggaaagctagctagttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttaaaaaaccttgtgttttctgataacttgaaacactggaaagctagctagttttg 440

                                                                       
Query: 241 attaccatttcagaaaacttggattttacagaggacttgcctggtgtgcctgagagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaccatttcagaaaacttggattttacagaggacttgcctggtgtgcctgagagtgtg 500

                                                                       
Query: 301 aagaagcccataagtaaacaaggagataaatccaaggaaaataccagaaagatttttagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaagcccataagtaaacaaggagataaatccaaggaaaataccagaaagatttttagt 560

                                                                       
Query: 361 ggccccaaacgggtaagtaaagcattaacactggtgtttttttttaataaaaatgtgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccccaaacgggtaagtaaagcattaacactggtgtttttttttaataaaaatgtgtgt 620

                   
Query: 421 gtgtgtgt 428
           ||||||||
Sbjct: 621 gtgtgtgt 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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