BAC Information

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BAC

Clone NameMSMg01-426P03
Chromosome14 (Build37)
Map Location 50,071,673 - 50,072,226
singlet/doubletsinglet
Overlap geneSlc35f4
Upstream gene6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426P03.T7 (MSMg01no426_p03.b1)MSMg01-426P03.TJ (MSMg01no426_p03.g1)
ACCAG520263AG520264
length762785
length of high quality
(start - end)
170 (43 - 212)554 (69 - 622)
definitionCHROMAT_FILE: MSMg01no426_p03.b1 PHD_FILE: MSMg01no426_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:40 2005CHROMAT_FILE: MSMg01no426_p03.g1 PHD_FILE: MSMg01no426_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGATCCTCATGCTACAGCCTCCCAAGTGATAGGCTGATACATGCGGC
CCACCATGACTGTTTTACAGTGATGGTTAGGGCTCATTTTTACAAAGTAG
AAACTGTGGCTACTAGCTCCTACAGGGTTAGATCCTGAGGTGGGGACCAC
AGCACCTAACTTAGGCCCAAAGGGCAGATGACCACTGGCCCTTTAAACTT
TCTCTTACTTTTCCGGGAAAGGCCCANAAAGCTGGATGGGTTCCGGGAAT
TTAAAATCCTTGGTAATTCGGGGGCCCCAAAAAGGTTGGAAGGAACTTTT
TGGGGGAGTTTTTCCCGGAAGAGAGGGGAAAGAAAATAATTGGGAGGGCC
CCGGGGGGCGTTGGGCCGGGGTGTTTATACTCCCGCCCCCCGCCCCCCNC
GCCTTNCTCTNNNNCTTCTGTCTTAGGTGAGGTTGCCTCCCTCTCCGCTC
TCCGAGNACTTTCGACCCTTCCTTCTNCCNCCCTCTTCATCTGTTCTCCC
GTTTCATCTTTTACGTTTTTTCGTTTNTTTGTTTTTTTTTTTTTCGGTTC
TTTTCCAGCCTTTTTTCCGTTTTTTATGTTTCCTATCAACTCCAACANNA
CTTTNTTGTTGCATCTTGTTGCGGNNNNNCGGGCGTTTGTTATCTCCGCT
TNCTCCTCATCTATTGTTCCCTCTGATGCTCGCCATTCCTTCACTTTTAT
TTCGCCTGCCTT
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCATGGGCTCATGTTTTGAAGGCTTGGTCTC
CAGTTTATAGTGCTATTTAGAAGGCTTTGGAGCCTTTGGGAGGTGGTGGC
CTGGCTGTCAAAAGTAGATTACAGTCTTTGAAGGTGATACCCACTCCTGA
TTTTTACCTACATTCTCTTTGATCTTGGTCTACCATGTTGTAAAGAACTC
CTGCTACATGTTCTTACTGATCTTTCTCTGACTGAGCCATTTACTGTGAT
TTTTATGTTATCCTGAACTGAAAGCCTTTGGTGCCATAAACCAAAATAAG
TACTCTCTCTACAATGCTGTCAAGTTACAGATATTCAATGCCCCTCTAAG
GGTTACTCCTGATAGTTTGGCCAACCACAGTGCAGCTGTCAGAATTTCTA
GCCAAAATTGCATAGTTAAACCCTTTAGCCAATGTGCTCATGTGTTTATC
CAATGTGATAAGAAATTTCAACCTAGTTTATTGGCATACAGCACTAATCC
CAGTACTCAGGAGGCAGAGGATCTTTGTGAGTTCAGGGGCAGCCTGGTCT
ACATAGTGAGCTCCCAGAGAGCTAGAATTATATAGTGAGACCCTGACTCC
ACAAAGACCAATACCTAAGTTTATTAAATTAACTGAAATAAAAGAATTCC
CATATCACCCAAGACGCAGGTTTCTTGATTCCATCTTGAAATTAAAGTCT
CCAGAAGGCCCCTTCCAACCCCCGCAACCCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_p03.g1 MSMg01no426_p03.g1 CHROMAT_FILE:
MSMg01no426_p03.g1 PHD_FILE: MSMg01no426_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:40 2005
         (554 letters)



>mm_chr14_50071473_50072426
          Length = 954

 Score = 1071 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatgggctcatgttttgaaggcttggtctccagtttatagtgctatttagaaggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatgggctcatgttttgaaggcttggtctccagtttatagtgctatttagaaggcttt 260

                                                                       
Query: 61  ggagcctttgggaggtggtggcctggctgtcaaaagtagattacagtctttgaaggtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcctttgggaggtggtggcctggctgtcaaaagtagattacagtctttgaaggtgat 320

                                                                       
Query: 121 acccactcctgatttttacctacattctctttgatcttggtctaccatgttgtaaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccactcctgatttttacctacattctctttgatcttggtctaccatgttgtaaagaac 380

                                                                       
Query: 181 tcctgctacatgttcttactgatctttctctgactgagccatttactgtgatttttatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgctacatgttcttactgatctttctctgactgagccatttactgtgatttttatgt 440

                                                                       
Query: 241 tatcctgaactgaaagcctttggtgccataaaccaaaataagtactctctctacaatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcctgaactgaaagcctttggtgccataaaccaaaataagtactctctctacaatgct 500

                                                                       
Query: 301 gtcaagttacagatattcaatgcccctctaagggttactcctgatagtttggccaaccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaagttacagatattcaatgcccctctaagggttactcctgatagtttggccaaccac 560

                                                                       
Query: 361 agtgcagctgtcagaatttctagccaaaattgcatagttaaaccctttagccaatgtgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgcagctgtcagaatttctagccaaaattgcatagttaaaccctttagccaatgtgct 620

                                                                       
Query: 421 catgtgtttatccaatgtgataagaaatttcaacctagtttattggcatacagcactaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgtgtttatccaatgtgataagaaatttcaacctagtttattggcatacagcactaat 680

                                                                       
Query: 481 cccagtactcaggaggcagaggatctttgtgagttcaggggcagcctggtctacatagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccagtactcaggaggcagaggatctttgtgagttcaggggcagcctggtctacatagtg 740

                         
Query: 541 agctcccagagagc 554
           ||||||||||||||
Sbjct: 741 agctcccagagagc 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)