BAC Information

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BAC

Clone NameMSMg01-427B17
Chromosome14 (Build37)
Map Location 17,122,755 - 17,266,034
singlet/doubletdoublet
Overlap geneNgly1, Top2b, Rarb
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427B17.T7 (MSMg01no427_b17.b1)MSMg01-427B17.TJ (MSMg01no427_b17.g1)
ACCAG520386AG520387
length748747
length of high quality
(start - end)		451 (54 - 504)496 (84 - 579)
definitionCHROMAT_FILE: MSMg01no427_b17.b1 PHD_FILE: MSMg01no427_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:53 2005CHROMAT_FILE: MSMg01no427_b17.g1 PHD_FILE: MSMg01no427_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,265,588 - 17,266,034)(17,122,755 - 17,123,250)
sequence
NNNNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTGCCTGTCCGAGAGATATAAATACTCTTGCCTCATG
ATTCTCAGTCTATGTGGCAACTCAGGCAATTACAGAAATGCCTAGAGGCA
TCTCATAGCTGAGTGCAGAGGACTTTTCTATCGAGATGACTCAGCCAGCC
ACGCTATTACATATCATGTTCCCTCCCATTAGCAGATTCTACACCTCAGG
ATCTTGGCAAGCCAAGACACAAAAGTGCTTAAATGCACAATGAACTTGCT
TGACAAGAAACCTCAGTTCTTGTTTTTTAGTTTTTTTGTGGGTTGGTTTT
GTTTTTCTTTTTTTATTCATTTGGTAGTTTGGTTTGAGGGAGACGAGGGG
AACATTCTAAGTTCATTTCCACCACAGGATTAAGAGAAGCAAAAAGACAC
TAGTACTTGAATGGATGTAATTGAATGAAGTGGGGAGAGAGAGAGAGGAG
AGGTATANTNNNNTNTTTNTTTTTNNTTTNTTTTTTTTTTTTNNNTTTNT
TTTTTNNTTNNTTTTTTTTTNTNTTTTTTTTTTTNNTTTTTTTCCTTTTT
TTTTTTTTTTTTTTNNTTTTTTTTNNNNNTTTTTTTTTTTNNNTTNTTTT
TTNTTTNNTTTNTCTTTTTTTTTTTTCTTTTTTTTTTTTNTTTNTTTTTT
TNTTTTTTTTTTTTNTNTTTNNTTTTTTTTTNTTTTTTTTTCCCTTCT

NAAATTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTGCTTCTCAGAG
CTTTGGCCCACAGTTTATTCCTGACTTCTCAGCCTCTTCTCATAGTGCTT
AATAACTGGCAAGTCCCTGGGAGGGGAAGAGGTACAGTATGCACCTTCAC
ATTAGTTCGTTTTCCCCTGAAATAATCTCGCATCCTGGCTCCTTGGTAAC
TTCCTACTTTATATACCCAGTCAATCTCCCCCATCCCCTCTTTATCTATG
TATGTGTGCGCACGTGTACACATGTCTCATAGTTTTTTATAGCTAGGCCA
TTGGTACAACACAAGCTAGTCTGTCACAAGCAAACAGAAGGTGCTACCGC
CCATCTTAAAGCTGCAATAATCCAGGTCATGAGAGTTTAAAATAGATGCT
AAATGATTTATTAAAATAAAATATATAAAATTAAGTTTTCTGAAGTTTTA
AATTTTCTAAGTAGTAAACTTTATTATTTCTTTCAAGAACTCTTCAGTTT
TTATTTTGCTTAAAGGTATTCTTCTGTATTCTCATAAACTCTAATTTTAA
ACATTAATTACAGAGACAGCTATCATTATCAGAAAGCAGAAGGAAAGAAC
TTCTCCAGAGGATAAATGTGGAGGCTGTTGAATTATATCTTCTAAAACCC
CAGAACTGGAGAAATTGGTGGAAGGTAACCCGGGCCATTGGCTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_b17.b1 MSMg01no427_b17.b1 CHROMAT_FILE:
MSMg01no427_b17.b1 PHD_FILE: MSMg01no427_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:53 2005
         (451 letters)



>mm_chr14_17265385_17266235
          Length = 851

 Score =  841 bits (435), Expect = 0.0
 Identities = 444/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgcctgtccgagagatataaatactcttgcctcatgattctcagtctatgtg 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggaattcttgcctggctgagagatataaatactcttgcctcatgattctcagtctatgtg 591

                                                                       
Query: 64  gcaactcaggcaattacagaaatgcctagaggcatctcatagctgagtgcagaggacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcaactcaggcaattacagaaatgcctagaggcatctcatagctgagtgcagaggacttt 531

                                                                       
Query: 124 tctatcgagatgactcagccagccacgctattacatatcatgttccctcccattagcaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctatcgagatgactcagccagccacgctattacatatcatgttccctcccattagcaga 471

                                                                       
Query: 184 ttctacacctcaggatcttggcaagccaagacacaaaagtgcttaaatgcacaatgaact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttctacacctcaggatcttggcaagccaagacacaaaagtgcttaaatgcacaatgaact 411

                                                                       
Query: 244 tgcttgacaagaaacctcagttcttgttttttagtttttttgtgggttggttttgttttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcttgacaagaaacctcagttcttgttttttagtttttttgtgggttggttttgttttt 351

                                                                       
Query: 304 ctttttttattcatttggtagtttggtttgagggagacgaggggaacattctaagttcat 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 350 ctttttttattcatttggtagtttggtttgagggagccgaggggaacattctaagttcat 291

                                                                       
Query: 364 ttccaccacaggattaagagaagcaaaaagacactagtacttgaatggatgtaattgaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttccaccacaggattaagagaagcaaaaagacactagtacttgaatggatgtaattgaat 231

                                      
Query: 424 gaagtggggagagagagagaggagagg 450
           |||||||||||||||||||||||||||
Sbjct: 230 gaagtggggagagagagagaggagagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_b17.g1 MSMg01no427_b17.g1 CHROMAT_FILE:
MSMg01no427_b17.g1 PHD_FILE: MSMg01no427_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:53 2005
         (496 letters)



>mm_chr14_17122555_17123450
          Length = 896

 Score =  920 bits (476), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgttgcttctcagagctttggcccacagtttattcctgacttctcagcctcttctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgttgcttctcagagctttggcccacagtttattcctgacttctcagcctcttctcat 260

                                                                       
Query: 61  agtgcttaataactggcaagtccctgggaggggaagaggtacagtatgcaccttcacatt 120
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 261 agtgcttaataactggcgagtccctgggaggggaagaggtacagtaggcaccttcacatc 320

                                                                       
Query: 121 agttcgttttcccctgaaataatctcgcatcctggctccttggtaacttcctactttata 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttccttttcccctgaaataatctcgcatcctggctccttggtaacttcctactttata 380

                                                                       
Query: 181 tacccagtcaatctcccccatcccctctttatctatgtatgtgtgcgcacgtgtacacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacccagtcaatctcccccatcccctctttatctatgtatgtgtgcgcacgtgtacacat 440

                                                                       
Query: 241 gtctcatagttttttatagctaggccattggtacaacacaagctagtctgtcacaagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctcatagttttttatagctaggccattggtacaacacaagctagtctgtcacaagcaa 500

                                                                       
Query: 301 acagaaggtgctaccgcccatcttaaagctgcaataatccaggtcatgagagtttaaaat 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaaggtgctaccgcccattttaaagctgcaataatccaggtcatgagagtttaaaat 560

                                                                       
Query: 361 agatgctaaatgatttattaaaataaaatatataaaattaagttttctgaagttttaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgctaaatgatttattaaaataaaatatataaaattaagttttctgaagttttaaat 620

                                                                       
Query: 421 tttctaagtagtaaactttattatttctttcaagaactcttcagtttttattttgcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctaagtagtaaactttattatttctttcaagaactcttcagtttttattttgcttaa 680

                           
Query: 481 aggtattcttctgtat 496
           ||||||||||||||||
Sbjct: 681 aggtattcttctgtat 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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